BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0098.p (355 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKK0.1 B3KKK0_9BACI Putative uncharacterized protein 595 e-168 B1DK06.1 B1DK06_9BACL Putative uncharacterized protein 550 e-155 C0ZIE9.1 C0ZIE9_BREBN DNA integrity scanning protein DisA 447 e-124 Q5WLT9.1 DISA_BACSK DNA integrity scanning protein disA 443 e-122 C1PXC0.1 C1PXC0_ALIAC Predicted nucleic-acid-binding protein (Co... 423 e-116 >B3KKK0.1 B3KKK0_9BACI Putative uncharacterized protein Length = 358 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 292/353 (82%), Positives = 323/353 (91%) Query: 3 ELENMNDLLRMAAPGTPFREGLENVLRAKTGALIVVGYSPEVMEVVDGGFSINCDFSPNY 62 +L+ MNDLL++ APGTPFR+GLENVLRAKTGALIVVGYSPEVMEVVDGGFSINCDFSPNY Sbjct: 6 QLDKMNDLLKLVAPGTPFRDGLENVLRAKTGALIVVGYSPEVMEVVDGGFSINCDFSPNY 65 Query: 63 LYELAKMDGAIILSEDLKRILYANTQLIPDSSISSIETGIRHRTAERVAKQTGKLVVSIS 122 LYELAKMDGAIILSEDLKRILYANTQLIPDSSISSIETGIRHRTAERVAKQTGKLVVSIS Sbjct: 66 LYELAKMDGAIILSEDLKRILYANTQLIPDSSISSIETGIRHRTAERVAKQTGKLVVSIS 125 Query: 123 QRRNIITLYQGSIRYALKEIGSILAKANQAIQTLEKYRAVLTQSLTNLSASEYEGIVTVA 182 QRRNIITLYQGS+RYALKEIG IL KANQAIQTLE+YR VL QSLTNLSASE+E +VT+ Sbjct: 126 QRRNIITLYQGSLRYALKEIGVILTKANQAIQTLERYRVVLNQSLTNLSASEFEELVTIP 185 Query: 183 EVVGVIQRVEMVLRIKMEIKRYINELGNEGRLISMQMEELVGNTEEEAWLLYRDYAREEQ 242 EVV VIQRVEMVLRIK EIKRYINELGNEGRLISMQM+ELV N EEEAWLLY DYARE Sbjct: 186 EVVNVIQRVEMVLRIKKEIKRYINELGNEGRLISMQMDELVSNMEEEAWLLYADYAREYS 245 Query: 243 EDKIREIIAGLKRTSDDDLMDDNHIARLLGYSSTAISSEEVVTPRGYRLLNKIPRLPNVI 302 E+KIREII LKR++D++L+D +HI RLLGY ++A +SEE + PRGYR+LNKIPRLPNVI Sbjct: 246 EEKIREIILALKRSTDEELLDIHHIVRLLGYPASAAASEEEILPRGYRILNKIPRLPNVI 305 Query: 303 IHNLVERFEMLPNLMTASIAELDEVDGIGEVRARNIQDGLKRLQKQVLIDRQM 355 I NLV++F L ++MTASI ELDEVDGIGEVRAR I++GLKRLQ+QV IDRQ+ Sbjct: 306 IRNLVDQFHDLSSIMTASIHELDEVDGIGEVRARTIKEGLKRLQEQVFIDRQI 358 >B1DK06.1 B1DK06_9BACL Putative uncharacterized protein Length = 358 Score = 550 bits (1418), Expect = e-155, Method: Compositional matrix adjust. Identities = 266/353 (75%), Positives = 313/353 (88%) Query: 3 ELENMNDLLRMAAPGTPFREGLENVLRAKTGALIVVGYSPEVMEVVDGGFSINCDFSPNY 62 +LE MN LL++ APGTPFR+GL+NVLRAKTGAL+VVGYSPEVMEVVDGGFSINCDFSPNY Sbjct: 6 QLEIMNQLLQLVAPGTPFRDGLDNVLRAKTGALLVVGYSPEVMEVVDGGFSINCDFSPNY 65 Query: 63 LYELAKMDGAIILSEDLKRILYANTQLIPDSSISSIETGIRHRTAERVAKQTGKLVVSIS 122 LYELAKMDGAIILSED+KRILYANTQLIP++SISSIETGIRHRTAERVAKQTGKLVVSIS Sbjct: 66 LYELAKMDGAIILSEDMKRILYANTQLIPNNSISSIETGIRHRTAERVAKQTGKLVVSIS 125 Query: 123 QRRNIITLYQGSIRYALKEIGSILAKANQAIQTLEKYRAVLTQSLTNLSASEYEGIVTVA 182 QRRNIITLYQG++RY+LKE+G IL KANQAIQTLEKY+ VL+QSLTNLSA E+E +VT+ Sbjct: 126 QRRNIITLYQGNLRYSLKEMGVILTKANQAIQTLEKYKVVLSQSLTNLSALEFEELVTLQ 185 Query: 183 EVVGVIQRVEMVLRIKMEIKRYINELGNEGRLISMQMEELVGNTEEEAWLLYRDYAREEQ 242 EV V+QRVEMVLR+KMEIKRY+ ELG EGRLI+MQMEELV +E+AW L +DYA++ Sbjct: 186 EVAHVVQRVEMVLRVKMEIKRYVTELGTEGRLIAMQMEELVNGVDEDAWYLLKDYAKDNT 245 Query: 243 EDKIREIIAGLKRTSDDDLMDDNHIARLLGYSSTAISSEEVVTPRGYRLLNKIPRLPNVI 302 +DKIREI A LK+ S +DL+D I RLLGY+ TA EE V+PRG+RLLNKIPRLP +I Sbjct: 246 DDKIREIRAALKKLSAEDLLDAPPIIRLLGYTHTAAMVEEAVSPRGFRLLNKIPRLPLII 305 Query: 303 IHNLVERFEMLPNLMTASIAELDEVDGIGEVRARNIQDGLKRLQKQVLIDRQM 355 ++NL+ERF LP+++ A+I ELDEVDGIGEVRAR I+DGLKR+Q+Q+ IDRQ+ Sbjct: 306 MNNLIERFGRLPHILMATIDELDEVDGIGEVRARAIKDGLKRIQEQMFIDRQI 358 >C0ZIE9.1 C0ZIE9_BREBN DNA integrity scanning protein DisA Length = 358 Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/355 (62%), Positives = 273/355 (76%), Gaps = 1/355 (0%) Query: 1 MKELENMNDLLRMAAPGTPFREGLENVLRAKTGALIVVGYSPEVMEVVDGGFSINCDFSP 60 +K + D+LR+ APGT REGLENVLRAKTG LIV+G PE+ +VDGGFSINCDFSP Sbjct: 5 IKRTPQIGDVLRLVAPGTQLREGLENVLRAKTGGLIVIGCGPEMKSIVDGGFSINCDFSP 64 Query: 61 NYLYELAKMDGAIILSEDLKRILYANTQLIPDSSISSIETGIRHRTAERVAKQTGKLVVS 120 +LYELAKMDGAII+SED KRILYANTQ+ P SSI + ETG RHRTA+R A QT LV++ Sbjct: 65 AHLYELAKMDGAIIVSEDAKRILYANTQIFPPSSIPTSETGTRHRTAQRTAIQTNHLVIA 124 Query: 121 ISQRRNIITLYQGSIRYALKEIGSILAKANQAIQTLEKYRAVLTQSLTNLSASEYEGIVT 180 ISQRRN+ITLYQGS RY L EI ILAKANQA+ TLEKY+AVL Q+LTNL A E+E +VT Sbjct: 125 ISQRRNVITLYQGSFRYVLSEISVILAKANQAVSTLEKYKAVLDQTLTNLGALEFEELVT 184 Query: 181 VAEVVGVIQRVEMVLRIKMEIKRYINELGNEGRLISMQMEELVGNTEEEAWLLYRDYARE 240 + EV V+QR+EMVLRIK E+ +YI ELG EGRL+SMQ+EELV N EEEA +L RDY+R+ Sbjct: 185 LHEVASVLQRIEMVLRIKTEVSKYICELGVEGRLVSMQLEELVSNIEEEAHMLIRDYSRD 244 Query: 241 EQEDKIREIIAGLKRTSDDDLMDDNHIARLLGYSSTAISSEEVVTPRGYRLLNKIPRLPN 300 ++ +K+ + +++++ R LGYSS A +E V+PRGYR+L KI RLP Sbjct: 245 PSYSP-DLVLRDMKKLNSEEMLELTSFLRTLGYSSNASMLDESVSPRGYRILYKIRRLPV 303 Query: 301 VIIHNLVERFEMLPNLMTASIAELDEVDGIGEVRARNIQDGLKRLQKQVLIDRQM 355 II NLVE F LP +M A+I ELDEV+GIGEVRAR I++GLKR+Q+QV IDR + Sbjct: 304 TIISNLVEHFHHLPRIMMATIQELDEVEGIGEVRARAIKEGLKRIQEQVFIDRHI 358 >Q5WLT9.1 DISA_BACSK DNA integrity scanning protein disA Length = 357 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/349 (61%), Positives = 282/349 (80%), Gaps = 1/349 (0%) Query: 7 MNDLLRMAAPGTPFREGLENVLRAKTGALIVVGYSPEVMEVVDGGFSINCDFSPNYLYEL 66 + +LL++ APGTP R G++NVLRAKTG LIV+GY+ E+M +VDGGF IN DFSP YLYEL Sbjct: 10 IQNLLKLVAPGTPLRAGIDNVLRAKTGGLIVLGYNSEMMNIVDGGFFINSDFSPAYLYEL 69 Query: 67 AKMDGAIILSEDLKRILYANTQLIPDSSISSIETGIRHRTAERVAKQTGKLVVSISQRRN 126 AKMDGAIILSED KRILYANTQL+P+++ISS ETGIRHR+AERVAKQTG L +SISQRRN Sbjct: 70 AKMDGAIILSEDGKRILYANTQLVPNNNISSSETGIRHRSAERVAKQTGNLTISISQRRN 129 Query: 127 IITLYQGSIRYALKEIGSILAKANQAIQTLEKYRAVLTQSLTNLSASEYEGIVTVAEVVG 186 +ITLYQG RYALK+IG IL KANQAIQTLEKY+AVL Q +TNL A E+E +VT ++V+ Sbjct: 130 VITLYQGEYRYALKDIGVILTKANQAIQTLEKYKAVLDQGITNLGALEFEQLVTYSDVIQ 189 Query: 187 VIQRVEMVLRIKMEIKRYINELGNEGRLISMQMEELVGNTEEEAWLLYRDYAREEQEDKI 246 VI RV+MVLRIK EI+ +I ELG+EGRLI+MQ++ELV NTE+EA L +DYA+E +D + Sbjct: 190 VIHRVQMVLRIKQEIQNFILELGDEGRLITMQLKELVSNTEQEALYLLKDYAKERTQD-V 248 Query: 247 REIIAGLKRTSDDDLMDDNHIARLLGYSSTAISSEEVVTPRGYRLLNKIPRLPNVIIHNL 306 ++ + L ++DL+D+ I + LGYS T+ E+ +PRGYR+L++IPRLP+ II N+ Sbjct: 249 KKTLKELTTLLNEDLLDEQAIIKALGYSRTSNFLEQPASPRGYRILHRIPRLPSQIIENV 308 Query: 307 VERFEMLPNLMTASIAELDEVDGIGEVRARNIQDGLKRLQKQVLIDRQM 355 ++ + L ++M A+ +LDEVDGIGE RA+ I+DGL R+Q+Q+ +DR + Sbjct: 309 IDEYGHLSSVMVATEDQLDEVDGIGEARAKMIKDGLNRIQEQLFVDRHI 357 >C1PXC0.1 C1PXC0_ALIAC Predicted nucleic-acid-binding protein (Contains the HHH domain) Length = 359 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 205/349 (58%), Positives = 273/349 (78%) Query: 7 MNDLLRMAAPGTPFREGLENVLRAKTGALIVVGYSPEVMEVVDGGFSINCDFSPNYLYEL 66 +N +LRM APGT REG+EN+LRAKTG LIVVG + V+ ++DGGF+I CD +P++LYEL Sbjct: 11 INKILRMVAPGTVLREGIENILRAKTGGLIVVGATETVLSMMDGGFAIQCDLTPSHLYEL 70 Query: 67 AKMDGAIILSEDLKRILYANTQLIPDSSISSIETGIRHRTAERVAKQTGKLVVSISQRRN 126 AKMDGAII+SED K++ YANT L PD +I + ETG RHRTAERVA+Q+G+LV+ ISQRRN Sbjct: 71 AKMDGAIIISEDAKKVHYANTTLNPDHTIPTSETGTRHRTAERVARQSGQLVICISQRRN 130 Query: 127 IITLYQGSIRYALKEIGSILAKANQAIQTLEKYRAVLTQSLTNLSASEYEGIVTVAEVVG 186 +ITLYQG+++Y L++I ILAKANQA+QTLEKY+ VL Q LT+LSA E+E VT+ +V Sbjct: 131 VITLYQGNLKYVLRDISVILAKANQALQTLEKYKTVLEQELTDLSALEFEEAVTLEDVTR 190 Query: 187 VIQRVEMVLRIKMEIKRYINELGNEGRLISMQMEELVGNTEEEAWLLYRDYAREEQEDKI 246 V+QR E VLR+ EI+RYI ELGNEGRL+SMQ+EELV + +E+A+LL +D+A E Sbjct: 191 VLQRFETVLRVTNEIRRYIIELGNEGRLVSMQLEELVSDVDEQAYLLIKDFAHPECPHTP 250 Query: 247 REIIAGLKRTSDDDLMDDNHIARLLGYSSTAISSEEVVTPRGYRLLNKIPRLPNVIIHNL 306 +I++ + S ++L+D +AR+LGY + EE V RGYR+LNKI RLP +I NL Sbjct: 251 HQIMSQIHNLSSEELLDGALLARILGYPPSVNQLEESVPSRGYRILNKISRLPQPVIENL 310 Query: 307 VERFEMLPNLMTASIAELDEVDGIGEVRARNIQDGLKRLQKQVLIDRQM 355 VE F +L N++ AS+A+LD+V+G+G VRAR IQ+GL R+Q+QVLIDRQ+ Sbjct: 311 VEHFGVLSNILKASMADLDKVEGVGPVRARMIQNGLGRIQEQVLIDRQI 359 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,897,733,408 Number of extensions: 74651850 Number of successful extensions: 244057 Number of sequences better than 1.0e-05: 242 Number of HSP's gapped: 243819 Number of HSP's successfully gapped: 242 Length of query: 355 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 218 Effective length of database: 1,770,017,148 Effective search space: 385863738264 Effective search space used: 385863738264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)