BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0095.p (362 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKJ7.1 B3KKJ7_9BACI PilT protein domain protein 474 e-132 B1DK03.1 B1DK03_9BACL PilT protein domain protein 437 e-121 C0ZIF2.1 C0ZIF2_BREBN Putative uncharacterized protein yacL 379 e-103 Q2B1J4.1 Q2B1J4_9BACI YacL 375 e-102 Q65PD3.1 Q65PD3_BACLD YacL 367 1e-99 >B3KKJ7.1 B3KKJ7_9BACI PilT protein domain protein Length = 313 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 246/313 (78%), Positives = 265/313 (84%) Query: 50 VLGAIIFLFAVTLCAEWGGSKLRETVQYYSRIPMNEXXXXXXXXXXXXXXXXXXYPAMTW 109 +LG ++F L A+ L + +SRIPMNE P ++ Sbjct: 1 MLGGLLFGMIGVLSADRVTRWLHSLISSFSRIPMNELAAGTAGLLSGLLLSLLLSPGLSL 60 Query: 110 LGKAGELLQVAATLTFGYMGLRIGLEKKEELASLWTTGRWGQAPEPEGRGLEEHKILDTS 169 LG+AG+LLQV TL GY+GLRIGLEKK+ELASLW +G+W Q EPEGR +EEHKILDTS Sbjct: 61 LGQAGQLLQVGITLLGGYIGLRIGLEKKDELASLWMSGKWSQTAEPEGRRVEEHKILDTS 120 Query: 170 VIIDGRIADICKTGFIEGTIVIPEFVLEELQHIADSSDLLKRNRGRRGLDILNKIQKELD 229 VIIDGRIADICKTGFIEGTIVIPEFVLEELQHIADSSDLLKRNRGRRGLDILNKIQKELD Sbjct: 121 VIIDGRIADICKTGFIEGTIVIPEFVLEELQHIADSSDLLKRNRGRRGLDILNKIQKELD 180 Query: 230 VKVLIYEGDFEEISEVDSKLVKLAKVLRGKVVTNDFNLNKVCELQGVSVLNINDLANAVK 289 VKVLIYEGDFEEISEVDSKLVKLAKVL+GKVVTNDFNLNKVCELQGVSVLNINDLANAVK Sbjct: 181 VKVLIYEGDFEEISEVDSKLVKLAKVLQGKVVTNDFNLNKVCELQGVSVLNINDLANAVK 240 Query: 290 PVVLPGEEIIVQVIKDGKEHGQGVAYLDDGTMIVVEGGREYIGTTMEVLVTSVLQTSAGR 349 PVVLPGEEI+VQ+IKDGKEHGQGVAYLDDGTMIVVEGGREYIGT MEVLVTSVLQTSAGR Sbjct: 241 PVVLPGEEILVQIIKDGKEHGQGVAYLDDGTMIVVEGGREYIGTMMEVLVTSVLQTSAGR 300 Query: 350 MIFAKPKLMEKAQ 362 MIFAKPKL+EKAQ Sbjct: 301 MIFAKPKLLEKAQ 313 >B1DK03.1 B1DK03_9BACL PilT protein domain protein Length = 363 Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/320 (70%), Positives = 252/320 (78%), Gaps = 3/320 (0%) Query: 45 SILFAVLGAIIFLFAVTLCAEWGGSKLRETVQYYSRIPMNEXXXXXXXXXXXXXXXXXXY 104 S+ + +GA+ L ++ A ++ + + +PM + Y Sbjct: 43 SVYYFAIGALFGLLVASMAAGRIMKFMQRGIDQTAEMPMKDLLAGSGGLLAGLFLSALLY 102 Query: 105 PAMTWLGKAGELLQVAATLTFGYMGLRIGLEKKEELASLWTTGRWGQAPEP---EGRGLE 161 PA+ LG G L+ +L FGY+GLRIGL KK+ELA+ + + P E G E Sbjct: 103 PAVAKLGGPGLLIPAVMSLFFGYLGLRIGLSKKDELAAAASAMLELRKSAPVADEAGGFE 162 Query: 162 EHKILDTSVIIDGRIADICKTGFIEGTIVIPEFVLEELQHIADSSDLLKRNRGRRGLDIL 221 EHKILDTSVIIDGRIADICKTGFIEGT+VIPEFVLEELQHIADSSDLLKRNRGRRGLDIL Sbjct: 163 EHKILDTSVIIDGRIADICKTGFIEGTLVIPEFVLEELQHIADSSDLLKRNRGRRGLDIL 222 Query: 222 NKIQKELDVKVLIYEGDFEEISEVDSKLVKLAKVLRGKVVTNDFNLNKVCELQGVSVLNI 281 NKIQKELDV+VLIYEGDFEEISEVDSKLVKLAK L+GKVVTNDFNLNKVCELQGVSVLNI Sbjct: 223 NKIQKELDVRVLIYEGDFEEISEVDSKLVKLAKALKGKVVTNDFNLNKVCELQGVSVLNI 282 Query: 282 NDLANAVKPVVLPGEEIIVQVIKDGKEHGQGVAYLDDGTMIVVEGGREYIGTTMEVLVTS 341 NDLANAVKPVVLPGEEIIVQVIKDGKEHGQGVAYLDDGTMIVVEGGR+YIGTTMEVLVTS Sbjct: 283 NDLANAVKPVVLPGEEIIVQVIKDGKEHGQGVAYLDDGTMIVVEGGRDYIGTTMEVLVTS 342 Query: 342 VLQTSAGRMIFAKPKLMEKA 361 VLQTSAGRMIFAKPKL+EKA Sbjct: 343 VLQTSAGRMIFAKPKLLEKA 362 >C0ZIF2.1 C0ZIF2_BREBN Putative uncharacterized protein yacL Length = 362 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/316 (62%), Positives = 242/316 (76%), Gaps = 3/316 (0%) Query: 49 AVLGAIIFLFAVTLCAEWGGSKLRETVQYYSRIPMNEXXXXXXXXXXXXXXXXXXYPAMT 108 AVLGAI+F F ++ +R + ++P+ + + ++ Sbjct: 46 AVLGAILFFFLANWVVDYVLRIVRWGEETLVKMPVVDVMFGAMGLISGLIVAFLLFLPIS 105 Query: 109 WLG--KAGELLQVAATLTFGYMGLRIGLEKKEELASLWTTGRWGQAPEPEGRGLE-EHKI 165 + G+LL + + GY+G ++G K++E+ S+++ GR + + + E+KI Sbjct: 106 KIPIPFVGDLLPLIVSGLLGYLGFQVGFRKRDEIMSVFSIGRKDKKKDSATTTVNLENKI 165 Query: 166 LDTSVIIDGRIADICKTGFIEGTIVIPEFVLEELQHIADSSDLLKRNRGRRGLDILNKIQ 225 LDTSVIIDGRIADIC+TGF+EG +VIP FVLEELQHIADSSD+LKRNRGRRGLDILNKIQ Sbjct: 166 LDTSVIIDGRIADICRTGFLEGVLVIPGFVLEELQHIADSSDVLKRNRGRRGLDILNKIQ 225 Query: 226 KELDVKVLIYEGDFEEISEVDSKLVKLAKVLRGKVVTNDFNLNKVCELQGVSVLNINDLA 285 KE+ VKV I+EGDFEE+SEVDSKL+KLAK++ GKVVTNDFNLNKVCELQGV+VLNINDLA Sbjct: 226 KEMKVKVQIWEGDFEEVSEVDSKLIKLAKLINGKVVTNDFNLNKVCELQGVAVLNINDLA 285 Query: 286 NAVKPVVLPGEEIIVQVIKDGKEHGQGVAYLDDGTMIVVEGGREYIGTTMEVLVTSVLQT 345 NAVKPVVLPGEE+ VQVIKDGKEHGQGVAYLDDGTMIVVEGGREYIG ++VLVTSVLQT Sbjct: 286 NAVKPVVLPGEEMNVQVIKDGKEHGQGVAYLDDGTMIVVEGGREYIGNDVDVLVTSVLQT 345 Query: 346 SAGRMIFAKPKLMEKA 361 SAGRMIFAKPKL+E+A Sbjct: 346 SAGRMIFAKPKLLERA 361 >Q2B1J4.1 Q2B1J4_9BACI YacL Length = 360 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/242 (78%), Positives = 215/242 (88%), Gaps = 3/242 (1%) Query: 122 TLTFGYMGLRIGLEKKEELASLWTTGRWGQAPEPEGRGLEEH--KILDTSVIIDGRIADI 179 TL FGY+G ++G +K++EL L+T+ R ++ E E +E++ KILDTSVIIDGRIADI Sbjct: 119 TLIFGYLGFQVGFKKRDELLGLFTS-RKKKSGEEEAEPVEKNALKILDTSVIIDGRIADI 177 Query: 180 CKTGFIEGTIVIPEFVLEELQHIADSSDLLKRNRGRRGLDILNKIQKELDVKVLIYEGDF 239 C+TGF+EGTIVIP+FVLEELQHIADSSD+LKRNRGRRGLDILN+IQKEL +KV IYEGDF Sbjct: 178 CQTGFLEGTIVIPQFVLEELQHIADSSDVLKRNRGRRGLDILNRIQKELSIKVEIYEGDF 237 Query: 240 EEISEVDSKLVKLAKVLRGKVVTNDFNLNKVCELQGVSVLNINDLANAVKPVVLPGEEII 299 EEI EVDSKLVKLAK+ G VVTNDFNLNKVCELQ VSVLNINDLANAVKPVVLPGEE+ Sbjct: 238 EEIQEVDSKLVKLAKLTNGVVVTNDFNLNKVCELQKVSVLNINDLANAVKPVVLPGEEMK 297 Query: 300 VQVIKDGKEHGQGVAYLDDGTMIVVEGGREYIGTTMEVLVTSVLQTSAGRMIFAKPKLME 359 VQVIKDGKEH QGVAYLDDGTMIVVE GR+YIG ++VLVTSVLQTSAGRMIFAKPKL+E Sbjct: 298 VQVIKDGKEHNQGVAYLDDGTMIVVEDGRDYIGKHIDVLVTSVLQTSAGRMIFAKPKLLE 357 Query: 360 KA 361 KA Sbjct: 358 KA 359 >Q65PD3.1 Q65PD3_BACLD YacL Length = 362 Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 184/238 (77%), Positives = 209/238 (87%), Gaps = 1/238 (0%) Query: 125 FGYMGLRIGLEKKEELASLWTT-GRWGQAPEPEGRGLEEHKILDTSVIIDGRIADICKTG 183 GY+G R+G +KK+E+ +L+T+ + G A E ++ KILDTSVIIDGRIADIC+TG Sbjct: 124 LGYLGFRVGFKKKDEMLTLFTSRKKKGSAEEERPEEDKKLKILDTSVIIDGRIADICQTG 183 Query: 184 FIEGTIVIPEFVLEELQHIADSSDLLKRNRGRRGLDILNKIQKELDVKVLIYEGDFEEIS 243 F+EG IVIP+FVLEELQHIADSSD+LKRNRGRRGLDILN+IQKELD+KV IYEGDFE+I Sbjct: 184 FLEGVIVIPQFVLEELQHIADSSDVLKRNRGRRGLDILNRIQKELDIKVEIYEGDFEDIQ 243 Query: 244 EVDSKLVKLAKVLRGKVVTNDFNLNKVCELQGVSVLNINDLANAVKPVVLPGEEIIVQVI 303 EVDSKLVKLAK+ G VVTNDFNLNKVCELQ V+VLNINDLANAVKPVVLPGEE+ VQVI Sbjct: 244 EVDSKLVKLAKLTSGVVVTNDFNLNKVCELQKVAVLNINDLANAVKPVVLPGEEMKVQVI 303 Query: 304 KDGKEHGQGVAYLDDGTMIVVEGGREYIGTTMEVLVTSVLQTSAGRMIFAKPKLMEKA 361 KDGKEH QGVAYLDDGTMIVVE GR YIG ++VLVTSVLQT+AGRMIFAKPKL+EKA Sbjct: 304 KDGKEHNQGVAYLDDGTMIVVEEGRNYIGKHIDVLVTSVLQTAAGRMIFAKPKLLEKA 361 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,034,461,224 Number of extensions: 83381849 Number of successful extensions: 234878 Number of sequences better than 1.0e-05: 352 Number of HSP's gapped: 234604 Number of HSP's successfully gapped: 352 Length of query: 362 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 225 Effective length of database: 1,770,017,148 Effective search space: 398253858300 Effective search space used: 398253858300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)