BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0093.p (162 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKJ5.1 B3KKJ5_9BACI 2-C-methyl-D-erythritol 2,4-cyclodiphospha... 269 5e-71 B1DK01.1 B1DK01_9BACL 2-C-methyl-D-erythritol 2,4-cyclodiphospha... 261 2e-68 C0ZIF4.1 C0ZIF4_BREBN 2-C-methyl-D-erythritol 2,4-cyclodiphospha... 236 4e-61 C3J536.1 C3J536_9BACI 2C-methyl-D-erythritol 2,4-cyclodiphosphat... 228 2e-58 B7YDQ9.1 B7YDQ9_9BACI 2-C-methyl-D-erythritol 2,4-cyclodiphospha... 228 2e-58 >B3KKJ5.1 B3KKJ5_9BACI 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 Length = 162 Score = 269 bits (688), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 129/162 (79%), Positives = 140/162 (86%) Query: 1 MIAVGQGFDVHQLVEGRPCIIGGVTIPYEKGLLGHSDADVLLHAVSXXXXXXXXXXXXXR 60 MI VGQGFDVHQLVEGRPCIIGGVTIPY+KGLLGHSDADVLLHAV+ R Sbjct: 1 MIRVGQGFDVHQLVEGRPCIIGGVTIPYDKGLLGHSDADVLLHAVTDAILGALGLGDIGR 60 Query: 61 HFPDTDPAFKDADSLKLLEQVWALARERGYKLGNIDSTIIAQKPKMAPYIPQMTEIIASA 120 HFPD DPAFKDADSLKLLEQVW +A+ERGY+LGNIDSTIIAQKPKMAPYIPQM E+IA A Sbjct: 61 HFPDNDPAFKDADSLKLLEQVWVMAKERGYRLGNIDSTIIAQKPKMAPYIPQMAEVIAKA 120 Query: 121 LGAETSKVNVKATTTEQLGFTGRGEGIAAQSIVCLLQDVISS 162 L AE +VNVKATTTEQLGFTGRGEGIAAQS+VCL++ V+SS Sbjct: 121 LDAEVDQVNVKATTTEQLGFTGRGEGIAAQSVVCLVKGVLSS 162 >B1DK01.1 B1DK01_9BACL 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 Length = 162 Score = 261 bits (666), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 126/160 (78%), Positives = 136/160 (85%) Query: 1 MIAVGQGFDVHQLVEGRPCIIGGVTIPYEKGLLGHSDADVLLHAVSXXXXXXXXXXXXXR 60 MI VGQGFDVHQLVEGRPCIIGGVTIPYEKGLLGHSDADVLLHA++ + Sbjct: 1 MIRVGQGFDVHQLVEGRPCIIGGVTIPYEKGLLGHSDADVLLHAITDAILGALGLGDIGK 60 Query: 61 HFPDTDPAFKDADSLKLLEQVWALARERGYKLGNIDSTIIAQKPKMAPYIPQMTEIIASA 120 HFPDT FKDADSLKLLE VWALA+ERGYKLGN DSTIIAQ+PKMAPYIPQM EIIA A Sbjct: 61 HFPDTSEEFKDADSLKLLEHVWALAKERGYKLGNCDSTIIAQRPKMAPYIPQMAEIIARA 120 Query: 121 LGAETSKVNVKATTTEQLGFTGRGEGIAAQSIVCLLQDVI 160 L A+ +VNVKATTTEQLGFTGRGEGIA+QS+VCL+QDVI Sbjct: 121 LEADIEQVNVKATTTEQLGFTGRGEGIASQSVVCLIQDVI 160 >C0ZIF4.1 C0ZIF4_BREBN 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 Length = 157 Score = 236 bits (603), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 116/154 (75%), Positives = 129/154 (83%), Gaps = 2/154 (1%) Query: 4 VGQGFDVHQLVEGRPCIIGGVTIPYEKGLLGHSDADVLLHAVSXXXXXXXXXXXXXRHFP 63 +GQGFDVHQLVEGRPCIIGGVTIP EKGLLGHSDADVLLHA+S RHFP Sbjct: 3 IGQGFDVHQLVEGRPCIIGGVTIPNEKGLLGHSDADVLLHAISDAILGAIGEGDIGRHFP 62 Query: 64 DTDPAFKDADSLKLLEQVWALARERGYKLGNIDSTIIAQKPKMAPYIPQMTEIIASALGA 123 DTDPAFKDADS+KLLE VW L RERGY+LGN+D+TIIAQ PKMAPYIPQM E+IA L A Sbjct: 63 DTDPAFKDADSVKLLEHVWKLVRERGYRLGNVDATIIAQAPKMAPYIPQMCEVIARVLEA 122 Query: 124 ET-SKVNVKATTTEQLGFTGRGEGIAAQSIVCLL 156 + S+VNVKATT+E+LGFTGRGEGIA+Q+ VCLL Sbjct: 123 DDLSQVNVKATTSEKLGFTGRGEGIASQA-VCLL 155 >C3J536.1 C3J536_9BACI 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 Length = 158 Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/155 (72%), Positives = 123/155 (79%) Query: 1 MIAVGQGFDVHQLVEGRPCIIGGVTIPYEKGLLGHSDADVLLHAVSXXXXXXXXXXXXXR 60 M +GQGFDVHQLVEGRP IIGGVTIPYEKGLLGHSDADVLLHAV+ R Sbjct: 1 MFRIGQGFDVHQLVEGRPLIIGGVTIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGR 60 Query: 61 HFPDTDPAFKDADSLKLLEQVWALARERGYKLGNIDSTIIAQKPKMAPYIPQMTEIIASA 120 HFPDTDP FKDADS +LL VWALAR+ GY+L N D TIIAQKPKMAPYI +M +IA Sbjct: 61 HFPDTDPRFKDADSAELLAHVWALARQEGYRLVNADCTIIAQKPKMAPYIEEMRAVIARL 120 Query: 121 LGAETSKVNVKATTTEQLGFTGRGEGIAAQSIVCL 155 L AE S+VNVKATTTE+LGFTGRGEGIAAQ++V L Sbjct: 121 LEAERSQVNVKATTTEKLGFTGRGEGIAAQAVVLL 155 >B7YDQ9.1 B7YDQ9_9BACI 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 Length = 158 Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/155 (72%), Positives = 123/155 (79%) Query: 1 MIAVGQGFDVHQLVEGRPCIIGGVTIPYEKGLLGHSDADVLLHAVSXXXXXXXXXXXXXR 60 M +GQGFDVHQLVEGRP IIGGVTIPYEKGLLGHSDADVLLHAV+ R Sbjct: 1 MFRIGQGFDVHQLVEGRPLIIGGVTIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGR 60 Query: 61 HFPDTDPAFKDADSLKLLEQVWALARERGYKLGNIDSTIIAQKPKMAPYIPQMTEIIASA 120 HFPDTDP FKDADS +LL VWALAR+ GY+L N D TIIAQKPKMAPYI +M +IA Sbjct: 61 HFPDTDPRFKDADSAELLAHVWALARQEGYRLVNADCTIIAQKPKMAPYIEEMRAVIARL 120 Query: 121 LGAETSKVNVKATTTEQLGFTGRGEGIAAQSIVCL 155 L AE S+VNVKATTTE+LGFTGRGEGIAAQ++V L Sbjct: 121 LEAERSQVNVKATTTEKLGFTGRGEGIAAQAVVLL 155 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 866,316,848 Number of extensions: 29244564 Number of successful extensions: 60997 Number of sequences better than 1.0e-05: 1254 Number of HSP's gapped: 60432 Number of HSP's successfully gapped: 1254 Length of query: 162 Length of database: 3,060,696,203 Length adjustment: 122 Effective length of query: 40 Effective length of database: 1,911,332,373 Effective search space: 76453294920 Effective search space used: 76453294920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)