BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0092.p (487 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKJ4.1 B3KKJ4_9BACI Glutamyl-tRNA synthetase 816 0.0 C3DDR8.1 C3DDR8_BACTS Glutamyl-tRNA synthetase 682 0.0 B7ISZ7.1 B7ISZ7_BACC2 Glutamyl-tRNA synthetase EC=6.1.1.17 680 0.0 Q3EUS4.1 Q3EUS4_BACTI Glutamyl-tRNA synthetase EC=6.1.1.17 680 0.0 C3IDG9.1 C3IDG9_BACTU Glutamyl-tRNA synthetase 680 0.0 >B3KKJ4.1 B3KKJ4_9BACI Glutamyl-tRNA synthetase Length = 487 Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/487 (78%), Positives = 429/487 (88%) Query: 1 MADQVRVRYAPSPTGHLHIGNARTALFNYLFARNLGGKFIIRIEDTDVKRNIAEGEESQL 60 M +VRVRYAPSPTGHLHIGNARTALFNYLFAR GKFIIRIEDTDVKRN+ GE+SQL Sbjct: 1 MTGEVRVRYAPSPTGHLHIGNARTALFNYLFARKNNGKFIIRIEDTDVKRNVEGGEQSQL 60 Query: 61 KYLKWLGMDWDESVDVGGEFGPYRQTERLDLYRVYWQELLDRGLAYRCYCTXXXXXXXXX 120 KYLKWLGMDWDESVDVGGE+GPYRQTERLD+Y+ YWQ+LLDRGLAYRCYCT Sbjct: 61 KYLKWLGMDWDESVDVGGEYGPYRQTERLDIYKEYWQDLLDRGLAYRCYCTEEELEQERE 120 Query: 121 XXXXXXXTPRYSGKHRNLTEEQQKAYEAEGRIASIRFRVPEDRTYTFDDIVKGSISFNSK 180 TPRYSGKHR+LTEEQ++A EAEGR+ASIRFRVPEDR YTFDD+VKG+ISFNSK Sbjct: 121 EQMARGETPRYSGKHRDLTEEQRQALEAEGRVASIRFRVPEDRVYTFDDMVKGTISFNSK 180 Query: 181 EMGDFVIVKKDGIPTYNFAVAVDDHLMEISHVLRGEDHISNTPRQLMIYEALGWEAPLFG 240 E GDFVIVKKDGIPTYNFAVA+DDHLM+ISHVLRGEDHISNTPRQLMIYEA GWE P FG Sbjct: 181 ETGDFVIVKKDGIPTYNFAVALDDHLMKISHVLRGEDHISNTPRQLMIYEAFGWEPPQFG 240 Query: 241 HMTLIVGDDHKKLSKRNESIIQFIEQYDQLGYLPEALFNFIALLGWSPEGEEEIFSKEEL 300 HMTLIVG+DHKKLSKRNESIIQFIEQYDQLGYLPEALFNFI+LLGWSPEGEEE+FS+E+L Sbjct: 241 HMTLIVGEDHKKLSKRNESIIQFIEQYDQLGYLPEALFNFISLLGWSPEGEEEVFSQEQL 300 Query: 301 ISIFTANRLSKSPAVFDTNKLAHLNNHYIKHADPKRIAALAIPHLQQAGRLPASLNEEQQ 360 ISIF +RLSKSPAVFDTNKLAH+NN YIK+ADP RIA LAIPHLQ+A RLP+ L EQ+ Sbjct: 301 ISIFDEHRLSKSPAVFDTNKLAHMNNTYIKNADPDRIADLAIPHLQKASRLPSELTAEQE 360 Query: 361 AWAESLVALYQEQMTSASNIVELSELFFRSHVELETEAAQILAESQVPEVLSAFLAKVEA 420 WA +LVALYQEQMT+AS+IV+LSE+FFR+H+EL+ E +++ QVP VLSAFLAK+E Sbjct: 361 EWARALVALYQEQMTAASDIVDLSEVFFRTHLELDAEGIEVMGGEQVPAVLSAFLAKIEQ 420 Query: 421 TGEFTASNMAVLIKEVQKETGHKGKALFMPIRVALTGQTHGRDLNATIVLLGRNRVIERL 480 + EF A +A +IKEVQKETG KGK LFMPIRVALTGQTHGRDLN TI LLGR+RV++RL Sbjct: 421 SDEFNAQKIAAMIKEVQKETGFKGKQLFMPIRVALTGQTHGRDLNQTIWLLGRDRVLDRL 480 Query: 481 KSQIKGA 487 +SQIKGA Sbjct: 481 RSQIKGA 487 >C3DDR8.1 C3DDR8_BACTS Glutamyl-tRNA synthetase Length = 491 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/484 (67%), Positives = 382/484 (78%) Query: 1 MADQVRVRYAPSPTGHLHIGNARTALFNYLFARNLGGKFIIRIEDTDVKRNIAEGEESQL 60 M QVRVRYAPSPTGHLHIGNARTALFNYLFAR+L GKFIIRIEDTDVKRN+A GEESQL Sbjct: 7 MEKQVRVRYAPSPTGHLHIGNARTALFNYLFARHLDGKFIIRIEDTDVKRNVAGGEESQL 66 Query: 61 KYLKWLGMDWDESVDVGGEFGPYRQTERLDLYRVYWQELLDRGLAYRCYCTXXXXXXXXX 120 KYLKWLGMDWDE VDVGGEFGPYRQTERLD+Y+ + +LL+RGLAY+CY T Sbjct: 67 KYLKWLGMDWDEGVDVGGEFGPYRQTERLDIYKKLYLDLLERGLAYKCYMTEEELEAERE 126 Query: 121 XXXXXXXTPRYSGKHRNLTEEQQKAYEAEGRIASIRFRVPEDRTYTFDDIVKGSISFNSK 180 TPRY+G HR+LTEEQ K +EAEGRI SIRFRVP DR YTF DIVK ++F+S Sbjct: 127 GQISRGETPRYAGNHRDLTEEQMKEFEAEGRIPSIRFRVPADRDYTFKDIVKDEVAFHSN 186 Query: 181 EMGDFVIVKKDGIPTYNFAVAVDDHLMEISHVLRGEDHISNTPRQLMIYEALGWEAPLFG 240 + GDFVIVKKDGIPTYNFAVAVDDHLMEI+HVLRG+DHISNTP+Q+MIYEA GW+ P FG Sbjct: 187 DFGDFVIVKKDGIPTYNFAVAVDDHLMEITHVLRGDDHISNTPKQMMIYEAFGWDIPQFG 246 Query: 241 HMTLIVGDDHKKLSKRNESIIQFIEQYDQLGYLPEALFNFIALLGWSPEGEEEIFSKEEL 300 HMTLIV + KKLSKR+ESIIQFIEQY +LGYLPEA+FNFIALLGWSP GEEEIFSKEE Sbjct: 247 HMTLIVNESRKKLSKRDESIIQFIEQYKELGYLPEAIFNFIALLGWSPVGEEEIFSKEEF 306 Query: 301 ISIFTANRLSKSPAVFDTNKLAHLNNHYIKHADPKRIAALAIPHLQQAGRLPASLNEEQQ 360 I +F A RLSKSPA+FD+ KL +NN Y+K D + L++PHL +AGR+ +L+E++Q Sbjct: 307 IKMFDAARLSKSPALFDSQKLKWMNNQYMKKQDLDTVVELSLPHLVKAGRIGETLSEQEQ 366 Query: 361 AWAESLVALYQEQMTSASNIVELSELFFRSHVELETEAAQILAESQVPEVLSAFLAKVEA 420 AW ++ALY EQM+ + IVELSE+FF+ HV+ E E ++L QVPEVL AF +VEA Sbjct: 367 AWIRDVIALYHEQMSFGAEIVELSEMFFKDHVDHEEEGQEVLKGEQVPEVLRAFAGQVEA 426 Query: 421 TGEFTASNMAVLIKEVQKETGHKGKALFMPIRVALTGQTHGRDLNATIVLLGRNRVIERL 480 + + IK VQKETGHKGK LFMPIRVA TGQTHG +L I LLG+ +V+ RL Sbjct: 427 LEAMEPAAIKAAIKAVQKETGHKGKNLFMPIRVATTGQTHGPELPNAIALLGKEKVLNRL 486 Query: 481 KSQI 484 + I Sbjct: 487 QKVI 490 >B7ISZ7.1 B7ISZ7_BACC2 Glutamyl-tRNA synthetase EC=6.1.1.17 Length = 491 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/484 (67%), Positives = 382/484 (78%) Query: 1 MADQVRVRYAPSPTGHLHIGNARTALFNYLFARNLGGKFIIRIEDTDVKRNIAEGEESQL 60 M QVRVRYAPSPTGHLHIGNARTALFNYLFAR+L GKFIIRIEDTDVKRN+A GEESQL Sbjct: 7 MEKQVRVRYAPSPTGHLHIGNARTALFNYLFARHLDGKFIIRIEDTDVKRNVAGGEESQL 66 Query: 61 KYLKWLGMDWDESVDVGGEFGPYRQTERLDLYRVYWQELLDRGLAYRCYCTXXXXXXXXX 120 KYLKWLGMDWDE VDVGGEFGPYRQTERLD+Y+ + +LL+RGLAY+CY T Sbjct: 67 KYLKWLGMDWDEGVDVGGEFGPYRQTERLDIYKKLYLDLLERGLAYKCYMTEEELEAERE 126 Query: 121 XXXXXXXTPRYSGKHRNLTEEQQKAYEAEGRIASIRFRVPEDRTYTFDDIVKGSISFNSK 180 TPRY+G HR+LTEEQ K +EAEGRI SIRFRVP DR YTF DIVK ++F+S Sbjct: 127 GQISRGETPRYAGNHRDLTEEQMKEFEAEGRIPSIRFRVPADRDYTFKDIVKDEVAFHSN 186 Query: 181 EMGDFVIVKKDGIPTYNFAVAVDDHLMEISHVLRGEDHISNTPRQLMIYEALGWEAPLFG 240 + GDFVIVKKDGIPTYNFAVAVDDHLMEI+HVLRG+DHISNTP+Q+MIYEA GW+ P FG Sbjct: 187 DFGDFVIVKKDGIPTYNFAVAVDDHLMEITHVLRGDDHISNTPKQMMIYEAFGWDIPQFG 246 Query: 241 HMTLIVGDDHKKLSKRNESIIQFIEQYDQLGYLPEALFNFIALLGWSPEGEEEIFSKEEL 300 HMTLIV + KKLSKR+ESIIQFIEQY +LGYLPEA+FNFIALLGWSP GEEEIFS+EE Sbjct: 247 HMTLIVNESRKKLSKRDESIIQFIEQYKELGYLPEAIFNFIALLGWSPVGEEEIFSQEEF 306 Query: 301 ISIFTANRLSKSPAVFDTNKLAHLNNHYIKHADPKRIAALAIPHLQQAGRLPASLNEEQQ 360 I +F A RLSKSPA+FD+ KL +NN Y+K D + L++PHL +AGR+ +L+E++Q Sbjct: 307 IKMFDAARLSKSPALFDSQKLKWMNNQYMKKQDLDTVVELSLPHLVKAGRIGETLSEQEQ 366 Query: 361 AWAESLVALYQEQMTSASNIVELSELFFRSHVELETEAAQILAESQVPEVLSAFLAKVEA 420 AW ++ALY EQM+ + IVELSE+FF+ HV+ E E ++L QVPEVL AF +VEA Sbjct: 367 AWIRDVIALYHEQMSFGAEIVELSEMFFKDHVDHEEEGQEVLKGEQVPEVLRAFAGQVEA 426 Query: 421 TGEFTASNMAVLIKEVQKETGHKGKALFMPIRVALTGQTHGRDLNATIVLLGRNRVIERL 480 + + IK VQKETGHKGK LFMPIRVA TGQTHG +L I LLG+ +V+ RL Sbjct: 427 LEAMEPAAIKAAIKAVQKETGHKGKNLFMPIRVATTGQTHGPELPNAIALLGKEKVLNRL 486 Query: 481 KSQI 484 + I Sbjct: 487 QKVI 490 >Q3EUS4.1 Q3EUS4_BACTI Glutamyl-tRNA synthetase EC=6.1.1.17 Length = 491 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/484 (67%), Positives = 382/484 (78%) Query: 1 MADQVRVRYAPSPTGHLHIGNARTALFNYLFARNLGGKFIIRIEDTDVKRNIAEGEESQL 60 M QVRVRYAPSPTGHLHIGNARTALFNYLFAR+L GKFIIRIEDTDVKRN+A GEESQL Sbjct: 7 MEKQVRVRYAPSPTGHLHIGNARTALFNYLFARHLDGKFIIRIEDTDVKRNVAGGEESQL 66 Query: 61 KYLKWLGMDWDESVDVGGEFGPYRQTERLDLYRVYWQELLDRGLAYRCYCTXXXXXXXXX 120 KYLKWLGMDWDE VDVGGEFGPYRQTERLD+Y+ + +LL+RGLAY+CY T Sbjct: 67 KYLKWLGMDWDEGVDVGGEFGPYRQTERLDIYKKLYLDLLERGLAYKCYMTEEELEAERE 126 Query: 121 XXXXXXXTPRYSGKHRNLTEEQQKAYEAEGRIASIRFRVPEDRTYTFDDIVKGSISFNSK 180 TPRY+G HR+LTEEQ K +EAEGRI SIRFRVP DR YTF DIVK ++F+S Sbjct: 127 GQISRGETPRYAGNHRDLTEEQMKEFEAEGRIPSIRFRVPADRDYTFKDIVKDEVAFHSN 186 Query: 181 EMGDFVIVKKDGIPTYNFAVAVDDHLMEISHVLRGEDHISNTPRQLMIYEALGWEAPLFG 240 + GDFVIVKKDGIPTYNFAVAVDDHLMEI+HVLRG+DHISNTP+Q+MIYEA GW+ P FG Sbjct: 187 DFGDFVIVKKDGIPTYNFAVAVDDHLMEITHVLRGDDHISNTPKQMMIYEAFGWDIPQFG 246 Query: 241 HMTLIVGDDHKKLSKRNESIIQFIEQYDQLGYLPEALFNFIALLGWSPEGEEEIFSKEEL 300 HMTLIV + KKLSKR+ESIIQFIEQY +LGYLPEA+FNFIALLGWSP GEEEIFS+EE Sbjct: 247 HMTLIVNESRKKLSKRDESIIQFIEQYKELGYLPEAIFNFIALLGWSPVGEEEIFSQEEF 306 Query: 301 ISIFTANRLSKSPAVFDTNKLAHLNNHYIKHADPKRIAALAIPHLQQAGRLPASLNEEQQ 360 I +F A RLSKSPA+FD+ KL +NN Y+K D + L++PHL +AGR+ +L+E++Q Sbjct: 307 IKMFDAARLSKSPALFDSQKLKWMNNQYMKKQDLDTVVELSLPHLVKAGRIGETLSEQEQ 366 Query: 361 AWAESLVALYQEQMTSASNIVELSELFFRSHVELETEAAQILAESQVPEVLSAFLAKVEA 420 AW ++ALY EQM+ + IVELSE+FF+ HV+ E E ++L QVPEVL AF +VEA Sbjct: 367 AWIRDVIALYHEQMSFGAEIVELSEMFFKDHVDHEEEGQEVLKGEQVPEVLRAFAGQVEA 426 Query: 421 TGEFTASNMAVLIKEVQKETGHKGKALFMPIRVALTGQTHGRDLNATIVLLGRNRVIERL 480 + + IK VQKETGHKGK LFMPIRVA TGQTHG +L I LLG+ +V+ RL Sbjct: 427 LEAMEPAAIKAAIKAVQKETGHKGKNLFMPIRVATTGQTHGPELPNAIALLGKEKVLNRL 486 Query: 481 KSQI 484 + I Sbjct: 487 QKVI 490 >C3IDG9.1 C3IDG9_BACTU Glutamyl-tRNA synthetase Length = 491 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/484 (67%), Positives = 382/484 (78%) Query: 1 MADQVRVRYAPSPTGHLHIGNARTALFNYLFARNLGGKFIIRIEDTDVKRNIAEGEESQL 60 M QVRVRYAPSPTGHLHIGNARTALFNYLFAR+L GKFIIRIEDTDVKRN+A GEESQL Sbjct: 7 MEKQVRVRYAPSPTGHLHIGNARTALFNYLFARHLDGKFIIRIEDTDVKRNVAGGEESQL 66 Query: 61 KYLKWLGMDWDESVDVGGEFGPYRQTERLDLYRVYWQELLDRGLAYRCYCTXXXXXXXXX 120 KYLKWLGMDWDE VDVGGEFGPYRQTERLD+Y+ + +LL+RGLAY+CY T Sbjct: 67 KYLKWLGMDWDEGVDVGGEFGPYRQTERLDIYKKLYLDLLERGLAYKCYMTEEELEAERE 126 Query: 121 XXXXXXXTPRYSGKHRNLTEEQQKAYEAEGRIASIRFRVPEDRTYTFDDIVKGSISFNSK 180 TPRY+G HR+LTEEQ K +EAEGRI SIRFRVP DR YTF DIVK ++F+S Sbjct: 127 GQISRGETPRYAGNHRDLTEEQMKEFEAEGRIPSIRFRVPADRDYTFKDIVKDEVAFHSN 186 Query: 181 EMGDFVIVKKDGIPTYNFAVAVDDHLMEISHVLRGEDHISNTPRQLMIYEALGWEAPLFG 240 + GDFVIVKKDGIPTYNFAVAVDDHLMEI+HVLRG+DHISNTP+Q+MIYEA GW+ P FG Sbjct: 187 DFGDFVIVKKDGIPTYNFAVAVDDHLMEITHVLRGDDHISNTPKQMMIYEAFGWDIPQFG 246 Query: 241 HMTLIVGDDHKKLSKRNESIIQFIEQYDQLGYLPEALFNFIALLGWSPEGEEEIFSKEEL 300 HMTLIV + KKLSKR+ESIIQFIEQY +LGYLPEA+FNFIALLGWSP GEEEIFS+EE Sbjct: 247 HMTLIVNESRKKLSKRDESIIQFIEQYKELGYLPEAIFNFIALLGWSPVGEEEIFSQEEF 306 Query: 301 ISIFTANRLSKSPAVFDTNKLAHLNNHYIKHADPKRIAALAIPHLQQAGRLPASLNEEQQ 360 I +F A RLSKSPA+FD+ KL +NN Y+K D + L++PHL +AGR+ +L+E++Q Sbjct: 307 IKMFDAARLSKSPALFDSQKLKWMNNQYMKKQDLDTVVELSLPHLVKAGRIGETLSEQEQ 366 Query: 361 AWAESLVALYQEQMTSASNIVELSELFFRSHVELETEAAQILAESQVPEVLSAFLAKVEA 420 AW ++ALY EQM+ + IVELSE+FF+ HV+ E E ++L QVPEVL AF +VEA Sbjct: 367 AWIRDVIALYHEQMSFGAEIVELSEMFFKDHVDHEEEGQEVLKGEQVPEVLRAFAGQVEA 426 Query: 421 TGEFTASNMAVLIKEVQKETGHKGKALFMPIRVALTGQTHGRDLNATIVLLGRNRVIERL 480 + + IK VQKETGHKGK LFMPIRVA TGQTHG +L I LLG+ +V+ RL Sbjct: 427 LEAMEPAAIKAAIKAVQKETGHKGKNLFMPIRVATTGQTHGPELPNAIALLGKEKVLNRL 486 Query: 481 KSQI 484 + I Sbjct: 487 QKVI 490 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,734,154,686 Number of extensions: 111837617 Number of successful extensions: 281277 Number of sequences better than 1.0e-05: 3268 Number of HSP's gapped: 272362 Number of HSP's successfully gapped: 3483 Length of query: 487 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 347 Effective length of database: 1,741,754,103 Effective search space: 604388673741 Effective search space used: 604388673741 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)