BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0090.p (356 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKJ2.1 B3KKJ2_9BACI Cysteinyl-tRNA synthetase EC=6.1.1.16 533 e-150 B1DJZ7.1 B1DJZ7_9BACL Cysteinyl-tRNA synthetase 506 e-141 A7GK01.1 SYC_BACCN Cysteinyl-tRNA synthetase EC=6.1.1.16 456 e-126 B5VD02.1 B5VD02_BACCE Cysteinyl-tRNA synthetase EC=6.1.1.16 449 e-124 B9IZH4.1 SYC_BACCQ Cysteinyl-tRNA synthetase EC=6.1.1.16 449 e-124 >B3KKJ2.1 B3KKJ2_9BACI Cysteinyl-tRNA synthetase EC=6.1.1.16 Length = 468 Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust. Identities = 240/322 (74%), Positives = 281/322 (87%) Query: 26 MALQIYNTMTRSKETFVPQESGKVKMYVCGPTVYGYMHIGNARPVIVFDMVRNYLEQTGN 85 MALQIYNT+TR KETFV QE GKVK+YVCGPTVY Y+HIGNARP+I FD+VR Y E GN Sbjct: 1 MALQIYNTLTRMKETFVAQEPGKVKIYVCGPTVYDYIHIGNARPMIFFDVVRAYFENQGN 60 Query: 86 EVNYVTNFTDVDDKLIRKAEEMKTTVAEVAEIFIAAYQEDLAGLGVKSATMNPRVTQSME 145 +VNYV NFTDVDDK+IRKAE+ TTV EVAE FI AY EDL GLG+ AT+NPRVT +ME Sbjct: 61 DVNYVVNFTDVDDKMIRKAEQTGTTVPEVAEKFINAYYEDLDGLGIPRATLNPRVTDNME 120 Query: 146 LIIEFIKELENKGYAYESGGDVYYRTAKFADYGKLSRQNLEELQFGIRVEVDSRKEKPED 205 IIEFI+EL ++ +AYE+GGDV+YRT KF DYGKLS+QNL+ELQFGIR+EVD RKE PED Sbjct: 121 SIIEFIQELIDRDFAYENGGDVFYRTRKFDDYGKLSQQNLDELQFGIRIEVDKRKENPED 180 Query: 206 FVLWKAAKPGEVHWHSPWGEGRPGWHIECSAMAREFLGDTIDIHGGGQDLQFPHHECECA 265 FVLWKAAKPGE++W SPWG+GRPGWHIECSAMAR +LGDT+DIHGGGQDLQFPHHECE A Sbjct: 181 FVLWKAAKPGEIYWSSPWGDGRPGWHIECSAMARRYLGDTLDIHGGGQDLQFPHHECEVA 240 Query: 266 QTEALTGKPLSNYWMHNGFINIGDEKMSKSLGNGLLVKDIRQRFKAGAIRYFMLSTHYRN 325 Q+EALTGKPL+NYWMHNG+I I +EKMSKSLGNG+LVK++R+++ A+RYFMLSTHYRN Sbjct: 241 QSEALTGKPLANYWMHNGYIRINNEKMSKSLGNGVLVKELREQYTKEAVRYFMLSTHYRN 300 Query: 326 PLNFTEESMLSAEKSAERIALA 347 PLN+++E M A+ S ER+A A Sbjct: 301 PLNYSDEVMEQAQNSVERLANA 322 >B1DJZ7.1 B1DJZ7_9BACL Cysteinyl-tRNA synthetase Length = 470 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 229/320 (71%), Positives = 269/320 (84%) Query: 26 MALQIYNTMTRSKETFVPQESGKVKMYVCGPTVYGYMHIGNARPVIVFDMVRNYLEQTGN 85 M +QIYNT+TRSKE FVPQE GKVKMYVCGPTVY Y+HIGNARPVI FD+VR YLE G Sbjct: 1 MNVQIYNTLTRSKEAFVPQEPGKVKMYVCGPTVYDYIHIGNARPVIFFDVVRRYLEYAGY 60 Query: 86 EVNYVTNFTDVDDKLIRKAEEMKTTVAEVAEIFIAAYQEDLAGLGVKSATMNPRVTQSME 145 +VNY+ NFTDVDDKLI+KAE++ TV EVA+ FI A+ ED+A LGV AT+NPRVT+ + Sbjct: 61 DVNYIVNFTDVDDKLIKKAEQLGLTVPEVADKFINAFNEDIASLGVHKATLNPRVTEHIP 120 Query: 146 LIIEFIKELENKGYAYESGGDVYYRTAKFADYGKLSRQNLEELQFGIRVEVDSRKEKPED 205 II FI+ L + GYAY S GDVYYRT+KF +YGKLS QNLEELQFGIR+EV RKE P+D Sbjct: 121 SIIAFIQGLVDTGYAYASEGDVYYRTSKFEEYGKLSHQNLEELQFGIRIEVGERKENPQD 180 Query: 206 FVLWKAAKPGEVHWHSPWGEGRPGWHIECSAMAREFLGDTIDIHGGGQDLQFPHHECECA 265 FVLWK KPGE++W SPWG GRPGWHIECSAMARE+LGDT+DIHGGG DLQFPHHECE A Sbjct: 181 FVLWKGVKPGEINWESPWGPGRPGWHIECSAMAREYLGDTLDIHGGGHDLQFPHHECEVA 240 Query: 266 QTEALTGKPLSNYWMHNGFINIGDEKMSKSLGNGLLVKDIRQRFKAGAIRYFMLSTHYRN 325 Q+EALTGK L+NYWMHNG+I+I +EKMSKSLGNG+ V ++ +R K AIRYF+LSTHYR+ Sbjct: 241 QSEALTGKQLANYWMHNGYIHINNEKMSKSLGNGITVNELVKRVKPAAIRYFILSTHYRS 300 Query: 326 PLNFTEESMLSAEKSAERIA 345 PLNFT+E++ AE S +RIA Sbjct: 301 PLNFTDETIAQAENSVDRIA 320 >A7GK01.1 SYC_BACCN Cysteinyl-tRNA synthetase EC=6.1.1.16 Length = 465 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 208/319 (65%), Positives = 251/319 (78%) Query: 26 MALQIYNTMTRSKETFVPQESGKVKMYVCGPTVYGYMHIGNARPVIVFDMVRNYLEQTGN 85 M + IYNT+TR KE F+P E KVKMYVCGPTVY Y+HIGNARP +VFD VR YLE G Sbjct: 1 MTIHIYNTLTRQKEEFIPLEEKKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEHKGY 60 Query: 86 EVNYVTNFTDVDDKLIRKAEEMKTTVAEVAEIFIAAYQEDLAGLGVKSATMNPRVTQSME 145 +V YV+NFTDVDDKLI+ A E+ V +AE FI AY ED+ LG K AT++PRVT++M+ Sbjct: 61 DVQYVSNFTDVDDKLIKAANELGEDVPTIAERFIEAYFEDVTALGCKHATVHPRVTENMD 120 Query: 146 LIIEFIKELENKGYAYESGGDVYYRTAKFADYGKLSRQNLEELQFGIRVEVDSRKEKPED 205 +IIEFI+EL NKGYAYES GDVYYRT +F YGKLS Q +E+L+ G R+EV +K+ P D Sbjct: 121 IIIEFIQELVNKGYAYESEGDVYYRTKEFEGYGKLSHQAIEDLRHGARIEVGEKKQDPLD 180 Query: 206 FVLWKAAKPGEVHWHSPWGEGRPGWHIECSAMAREFLGDTIDIHGGGQDLQFPHHECECA 265 F LWKAAK GE+ W SPWG+GRPGWHIECSAMAR++LGD+IDIH GGQDL FPHHE E A Sbjct: 181 FALWKAAKEGEIFWESPWGKGRPGWHIECSAMARKYLGDSIDIHAGGQDLSFPHHENEIA 240 Query: 266 QTEALTGKPLSNYWMHNGFINIGDEKMSKSLGNGLLVKDIRQRFKAGAIRYFMLSTHYRN 325 Q+EALTGKP + YWMHNG+INI +EKMSKSLGN +LV DI +++ IR+FMLS HYR+ Sbjct: 241 QSEALTGKPFARYWMHNGYININNEKMSKSLGNFILVHDIIKQYDPQLIRFFMLSVHYRH 300 Query: 326 PLNFTEESMLSAEKSAERI 344 P+NF+EE + S ERI Sbjct: 301 PINFSEELLQSTNNGLERI 319 >B5VD02.1 B5VD02_BACCE Cysteinyl-tRNA synthetase EC=6.1.1.16 Length = 465 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 250/322 (77%) Query: 26 MALQIYNTMTRSKETFVPQESGKVKMYVCGPTVYGYMHIGNARPVIVFDMVRNYLEQTGN 85 M + IYNT+TR KE F+P E KVKMYVCGPTVY Y+HIGNARP +VFD VR YLE G Sbjct: 1 MTIHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 86 EVNYVTNFTDVDDKLIRKAEEMKTTVAEVAEIFIAAYQEDLAGLGVKSATMNPRVTQSME 145 +V YV+NFTDVDDKLI+ A E+ V +A+ F+ AY ED+ LG K AT++PRVT++M+ Sbjct: 61 DVQYVSNFTDVDDKLIKAANELGEDVPTIADRFVEAYFEDVTALGCKHATVHPRVTENMD 120 Query: 146 LIIEFIKELENKGYAYESGGDVYYRTAKFADYGKLSRQNLEELQFGIRVEVDSRKEKPED 205 +IIEFI+EL NKGYAYES GDVY+RT +F YGKLS Q + +L+ G R+EV +K+ P D Sbjct: 121 IIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLD 180 Query: 206 FVLWKAAKPGEVHWHSPWGEGRPGWHIECSAMAREFLGDTIDIHGGGQDLQFPHHECECA 265 F LWKAAK GE+ W SPWG+GRPGWHIECSAMAR++LGDTIDIH GGQDL FPHHE E A Sbjct: 181 FALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIA 240 Query: 266 QTEALTGKPLSNYWMHNGFINIGDEKMSKSLGNGLLVKDIRQRFKAGAIRYFMLSTHYRN 325 Q+EALTGK + YWMHNG+INI +EKMSKSLGN +LV DI +++ IR+FMLS HYR+ Sbjct: 241 QSEALTGKTFARYWMHNGYININNEKMSKSLGNFILVHDIIKQYDPQLIRFFMLSVHYRH 300 Query: 326 PLNFTEESMLSAEKSAERIALA 347 P+NF+EE + S ERI A Sbjct: 301 PINFSEELLRSTNNGLERIKTA 322 >B9IZH4.1 SYC_BACCQ Cysteinyl-tRNA synthetase EC=6.1.1.16 Length = 465 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 250/322 (77%) Query: 26 MALQIYNTMTRSKETFVPQESGKVKMYVCGPTVYGYMHIGNARPVIVFDMVRNYLEQTGN 85 M + IYNT+TR KE F+P E KVKMYVCGPTVY Y+HIGNARP +VFD VR YLE G Sbjct: 1 MTIHIYNTLTRQKEEFIPLEENKVKMYVCGPTVYNYIHIGNARPPMVFDTVRRYLEYKGY 60 Query: 86 EVNYVTNFTDVDDKLIRKAEEMKTTVAEVAEIFIAAYQEDLAGLGVKSATMNPRVTQSME 145 +V YV+NFTDVDDKLI+ A E+ V +A+ F+ AY ED+ LG K AT++PRVT++M+ Sbjct: 61 DVQYVSNFTDVDDKLIKAANELGEDVPTIADRFVEAYFEDVTALGCKHATVHPRVTENMD 120 Query: 146 LIIEFIKELENKGYAYESGGDVYYRTAKFADYGKLSRQNLEELQFGIRVEVDSRKEKPED 205 +IIEFI+EL NKGYAYES GDVY+RT +F YGKLS Q + +L+ G R+EV +K+ P D Sbjct: 121 IIIEFIQELVNKGYAYESEGDVYFRTKEFEGYGKLSHQPIADLRHGARIEVGEKKQDPLD 180 Query: 206 FVLWKAAKPGEVHWHSPWGEGRPGWHIECSAMAREFLGDTIDIHGGGQDLQFPHHECECA 265 F LWKAAK GE+ W SPWG+GRPGWHIECSAMAR++LGDTIDIH GGQDL FPHHE E A Sbjct: 181 FALWKAAKEGEIFWESPWGQGRPGWHIECSAMARKYLGDTIDIHAGGQDLAFPHHENEIA 240 Query: 266 QTEALTGKPLSNYWMHNGFINIGDEKMSKSLGNGLLVKDIRQRFKAGAIRYFMLSTHYRN 325 Q+EALTGK + YWMHNG+INI +EKMSKSLGN +LV DI +++ IR+FMLS HYR+ Sbjct: 241 QSEALTGKTFARYWMHNGYININNEKMSKSLGNFILVHDIIKQYDPQLIRFFMLSVHYRH 300 Query: 326 PLNFTEESMLSAEKSAERIALA 347 P+NF+EE + S ERI A Sbjct: 301 PINFSEELLRSTNNGLERIKTA 322 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,072,750,131 Number of extensions: 88503974 Number of successful extensions: 279524 Number of sequences better than 1.0e-05: 2071 Number of HSP's gapped: 275208 Number of HSP's successfully gapped: 2183 Length of query: 356 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 219 Effective length of database: 1,770,017,148 Effective search space: 387633755412 Effective search space used: 387633755412 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)