BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0089.p
         (120 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKJ2.1 B3KKJ2_9BACI Cysteinyl-tRNA synthetase EC=6.1.1.16           137   3e-31
B1DJZ7.1 B1DJZ7_9BACL Cysteinyl-tRNA synthetase                       114   4e-24
C0ZIF7.1 SYC_BREBN Cysteinyl-tRNA synthetase EC=6.1.1.16               95   3e-18
B7Y1M4.1 B7Y1M4_RUMHA Putative uncharacterized protein                 91   4e-17
B7DS14.1 B7DS14_9BACL Cysteinyl-tRNA synthetase EC=6.1.1.16            90   6e-17

>B3KKJ2.1 B3KKJ2_9BACI Cysteinyl-tRNA synthetase EC=6.1.1.16
          Length = 468

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/120 (56%), Positives = 80/120 (66%)

Query: 1   LAAIVANFHAKMQDDFNTPDAITAVFDWVSLANNTLANPEALSADFSALLQAFTEMNAVL 60
           ++A++  FH KMQDDFNTPDAITA+F W S AN  L      +AD   +L+AF EMN VL
Sbjct: 349 ISAVLVEFHEKMQDDFNTPDAITAMFQWASEANQLLKEASIPAADLHEVLRAFNEMNGVL 408

Query: 61  RLTPXXXXXXXXXXXXRLIAERAEARKNKNWGRSDEIRDELNAMGILLEDTPQGMRWRRK 120
           R+               LIAER EARKNKNW R+DEIRD+L   GI+LEDT QGMRWRRK
Sbjct: 409 RIVNNGTDELLDEEIEALIAERVEARKNKNWARADEIRDKLADEGIVLEDTAQGMRWRRK 468


>B1DJZ7.1 B1DJZ7_9BACL Cysteinyl-tRNA synthetase
          Length = 470

 Score =  114 bits (284), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/121 (52%), Positives = 74/121 (61%), Gaps = 2/121 (1%)

Query: 1   LAAIVANFHAKMQDDFNTPDAITAVFDWVSLANNTLANPEALSADFSALLQAFTEMNAVL 60
           +A + A F AKM DDFNTPDAITAVF+ V+ AN  +   +A S   +ALL A  +MN VL
Sbjct: 349 IAQLKAQFEAKMGDDFNTPDAITAVFELVTEANQYMNRADASSEGIAALLAALEQMNTVL 408

Query: 61  RLTPXXXXXXXXX--XXXRLIAERAEARKNKNWGRSDEIRDELNAMGILLEDTPQGMRWR 118
            L P               LI ER EAR  KNW R+DEIR+ L   GI LEDTPQG+RWR
Sbjct: 409 GLLPEAGTDAELLDDEIDALIVERTEARAAKNWARADEIRNLLTEKGIALEDTPQGIRWR 468

Query: 119 R 119
           R
Sbjct: 469 R 469


>C0ZIF7.1 SYC_BREBN Cysteinyl-tRNA synthetase EC=6.1.1.16
          Length = 468

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 64/113 (56%)

Query: 8   FHAKMQDDFNTPDAITAVFDWVSLANNTLANPEALSADFSALLQAFTEMNAVLRLTPXXX 67
           F A+M DD NT +AIT +FD V  AN  L +      +  A +    E+  VL L     
Sbjct: 356 FIAEMDDDINTANAITVIFDVVKEANLYLRHQNVGETEVRAYMDLLVELTEVLGLDIAEE 415

Query: 68  XXXXXXXXXRLIAERAEARKNKNWGRSDEIRDELNAMGILLEDTPQGMRWRRK 120
                     LI ER EARK +N+ RSDEIRD L A GI+LEDTPQG+RWRRK
Sbjct: 416 QELLDSEIDALIEERTEARKARNFARSDEIRDLLAAKGIVLEDTPQGVRWRRK 468


>B7Y1M4.1 B7Y1M4_RUMHA Putative uncharacterized protein
          Length = 468

 Score = 90.5 bits (223), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 5   VANFHAKMQDDFNTPDAITAVFDWVSLANNTLANPEALSADFSALLQAFTEMNAVLRLTP 64
           V  +   M+DDFNT DAI A+F+ V  AN T AN  + +A    L      ++ VL L  
Sbjct: 354 VKKYENSMEDDFNTADAIAAIFELVKFAN-TKANENSTAAFVQYLFDTIVHLSDVLGLIV 412

Query: 65  XXXXXXXXXXXXRLIAERAEARKNKNWGRSDEIRDELNAMGILLEDTPQGMRWRR 119
                       +LI ER  ARK KN+ R+DEIRDEL  MGI+L+DT +G++W+R
Sbjct: 413 NKEAEILDEEIEKLIEERQMARKEKNFKRADEIRDELATMGIILKDTREGVQWKR 467


>B7DS14.1 B7DS14_9BACL Cysteinyl-tRNA synthetase EC=6.1.1.16
          Length = 474

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 4   IVANFHAKMQDDFNTPDAITAVFDWVSLANNTLANPEALSADFSALLQAFTEMNAVLRLT 63
           I + F   M DDFNT D + A+FD V L N  L        D       F E+  VL + 
Sbjct: 358 IRSAFIQAMDDDFNTADGMAAIFDGVRLVNTRLEEGGVTLGDLHLYRDLFVELLGVLGI- 416

Query: 64  PXXXXXXXXXXXXRLIAERAEARKNKNWGRSDEIRDELNAMGILLEDTPQGMRW 117
           P            RLIAERAEARK +++ R+DEIRD+L   GI+LEDTP G RW
Sbjct: 417 PKKEEERLEDEIERLIAERAEARKRRDFARADEIRDQLRHRGIVLEDTPYGTRW 470


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 600,770,293
Number of extensions: 16442051
Number of successful extensions: 44125
Number of sequences better than 1.0e-05: 873
Number of HSP's gapped: 43377
Number of HSP's successfully gapped: 873
Length of query: 120
Length of database: 3,060,696,203
Length adjustment: 86
Effective length of query: 34
Effective length of database: 2,250,488,913
Effective search space: 76516623042
Effective search space used: 76516623042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)