BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0088.p
         (149 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKJ1.1 B3KKJ1_9BACI Ribonuclease III                                213   5e-54
B1DJZ6.1 B1DJZ6_9BACL Ribonuclease III                                151   2e-35
A6CU31.1 A6CU31_9BACI YazC                                            134   2e-30
C3J540.1 C3J540_9BACI Ribonuclease III                                129   6e-29
B7YDR3.1 B7YDR3_9BACI Ribonuclease III                                129   6e-29

>B3KKJ1.1 B3KKJ1_9BACI Ribonuclease III
          Length = 147

 Score =  213 bits (541), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/142 (71%), Positives = 121/142 (85%), Gaps = 2/142 (1%)

Query: 5   MSGPFNLESA--WFPYEPSKPARLLSPLVLAYAGDAIYEVAVRQYLISLPNLRPNHLHRT 62
           MSG  + + A  WF + PSKPARL+ P+VLAY GDAIYEVAVRQ+LIS  NLRP+HLHR+
Sbjct: 1   MSGDKHQDPAVGWFDFPPSKPARLIPPIVLAYIGDAIYEVAVRQFLISRANLRPHHLHRS 60

Query: 63  ATGLVSAKAQSTILAYLEPELTDEEKDVARQGRNAKSGTIPKNADVLEYRHATAFECLIG 122
           AT  VSAKAQS ILA+L+PELT+EE+DV RQGRNAKSG+IPKNADVLEYRHATAFE L+G
Sbjct: 61  ATSFVSAKAQSRILAFLDPELTEEERDVVRQGRNAKSGSIPKNADVLEYRHATAFETLVG 120

Query: 123 YLYYTGQQARIRELVDSSIQYM 144
           YLYY G+Q R+REL+  SI+++
Sbjct: 121 YLYYAGEQDRLRELIGKSIEFI 142


>B1DJZ6.1 B1DJZ6_9BACL Ribonuclease III
          Length = 167

 Score =  151 bits (381), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/124 (54%), Positives = 94/124 (75%)

Query: 18  YEPSKPARLLSPLVLAYAGDAIYEVAVRQYLISLPNLRPNHLHRTATGLVSAKAQSTILA 77
           + PSK  +L++P+VLAY GD+++E+ VRQYL+SLPN + +HLH+ AT +VSAKAQ  +L 
Sbjct: 29  HRPSKKTQLINPVVLAYVGDSVFELLVRQYLVSLPNHKSHHLHKEATKIVSAKAQRKLLE 88

Query: 78  YLEPELTDEEKDVARQGRNAKSGTIPKNADVLEYRHATAFECLIGYLYYTGQQARIRELV 137
             +P LT+EE D+ R+GRN KSG  PKNAD  +YR ATA ECL+GYLYY G+  R+ EL 
Sbjct: 89  KWQPMLTEEEADIVRRGRNTKSGAPPKNADPADYRQATALECLVGYLYYEGRIERLHELF 148

Query: 138 DSSI 141
            +++
Sbjct: 149 AAAV 152


>A6CU31.1 A6CU31_9BACI YazC
          Length = 143

 Score =  134 bits (338), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 23  PARLLSPLVLAYAGDAIYEVAVRQYLISLPNLRPNHLHRTATGLVSAKAQSTILAYLEPE 82
            A+ ++ L LAY GDA+YE  VRQYL+    L+PNHLHR ATG VSAKAQ+  L  L   
Sbjct: 10  DAKQMNALALAYMGDAVYETYVRQYLLQSGRLKPNHLHRAATGYVSAKAQAAALKRLSDS 69

Query: 83  --LTDEEKDVARQGRNAKSGTIPKNADVLEYRHATAFECLIGYLYYTGQQARIRELV 137
             L++EEK + R+GRNAKSGTIPKN DV  YR++TAFE LIGYL+   ++ R+ EL+
Sbjct: 70  DLLSEEEKAIVRRGRNAKSGTIPKNTDVQTYRYSTAFEALIGYLFLQSRKDRLEELI 126


>C3J540.1 C3J540_9BACI Ribonuclease III
          Length = 141

 Score =  129 bits (325), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/127 (52%), Positives = 88/127 (69%), Gaps = 2/127 (1%)

Query: 17  PYEPSKPARLLSPLVLAYAGDAIYEVAVRQYLISLPNLRPNHLHRTATGLVSAKAQS-TI 75
            +E     + L+ L LAY GDA+YEV VR++L++  ++RP+ LHR A   VSA+AQ+  I
Sbjct: 4   EFETVNDVKQLNGLALAYIGDAVYEVYVRRHLLAGGSVRPHELHRRAVRYVSARAQARVI 63

Query: 76  LAYL-EPELTDEEKDVARQGRNAKSGTIPKNADVLEYRHATAFECLIGYLYYTGQQARIR 134
           LA L E  LT+EEKD+ R+GRNAKSGTIPKN DV  YRH+TAFE LIGY +    + R+ 
Sbjct: 64  LALLDEGVLTEEEKDIVRRGRNAKSGTIPKNTDVQTYRHSTAFEALIGYHFLVNNEKRVD 123

Query: 135 ELVDSSI 141
           EL+  S 
Sbjct: 124 ELIGRSF 130


>B7YDR3.1 B7YDR3_9BACI Ribonuclease III
          Length = 141

 Score =  129 bits (325), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/127 (52%), Positives = 88/127 (69%), Gaps = 2/127 (1%)

Query: 17  PYEPSKPARLLSPLVLAYAGDAIYEVAVRQYLISLPNLRPNHLHRTATGLVSAKAQS-TI 75
            +E     + L+ L LAY GDA+YEV VR++L++  ++RP+ LHR A   VSA+AQ+  I
Sbjct: 4   EFETVNDVKQLNGLALAYIGDAVYEVYVRRHLLAGGSVRPHELHRRAVRYVSARAQARVI 63

Query: 76  LAYL-EPELTDEEKDVARQGRNAKSGTIPKNADVLEYRHATAFECLIGYLYYTGQQARIR 134
           LA L E  LT+EEKD+ R+GRNAKSGTIPKN DV  YRH+TAFE LIGY +    + R+ 
Sbjct: 64  LALLDEGVLTEEEKDIVRRGRNAKSGTIPKNTDVQTYRHSTAFEALIGYHFLVNNEKRVD 123

Query: 135 ELVDSSI 141
           EL+  S 
Sbjct: 124 ELIGRSF 130


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 861,502,808
Number of extensions: 32036355
Number of successful extensions: 72154
Number of sequences better than 1.0e-05: 461
Number of HSP's gapped: 71713
Number of HSP's successfully gapped: 461
Length of query: 149
Length of database: 3,060,696,203
Length adjustment: 111
Effective length of query: 38
Effective length of database: 2,014,963,538
Effective search space: 76568614444
Effective search space used: 76568614444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)