BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0086.p (173 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKI8.1 B3KKI8_9BACI Putative uncharacterized protein 236 6e-61 B1DJZ4.1 B1DJZ4_9BACL Putative uncharacterized protein 169 7e-41 A6CU29.1 A6CU29_9BACI Putative uncharacterized protein 146 6e-34 Q9KGF1.1 Q9KGF1_BACHD BH0114 protein 145 2e-33 C0ZIG0.1 C0ZIG0_BREBN Putative uncharacterized protein 144 2e-33 >B3KKI8.1 B3KKI8_9BACI Putative uncharacterized protein Length = 173 Score = 236 bits (602), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 112/173 (64%), Positives = 136/173 (78%), Gaps = 1/173 (0%) Query: 1 MADWRDILLVDGYNMIGGWPDLAELSLSGMQGARDRLLDMLADYQAFSGLRVIAVFDAYR 60 MADWRD+LLVDGYNMIGGWP LA+L+ S M ARD LL+ LADYQA+SGLRV+ +FDAYR Sbjct: 2 MADWRDVLLVDGYNMIGGWPHLAKLANSSMHEARDLLLEKLADYQAYSGLRVVVIFDAYR 61 Query: 61 VPGLGRSFVQGKVQVFFTKEKETADECIERLVGEFSHRRRQIYVATSDFVEQHVIFAQGX 120 VPGLG+S+ QGKVQVFFTKEKETADECIERLVGEFSHRRR+IYVATSD +EQHVIFA+G Sbjct: 62 VPGLGKSYTQGKVQVFFTKEKETADECIERLVGEFSHRRRKIYVATSDLIEQHVIFARGA 121 Query: 121 XXXXXXXXXXXXXXXQKQVKKVIEPKNISSTRHSLEEKLPPETRRRLEDWRRQ 173 +++VK+ I K + +R++L+ KLPP+ R+ E WRR+ Sbjct: 122 LRLSARELLSEVEQSEREVKQKI-TKEHTKSRNTLDGKLPPDVRQAFERWRRE 173 >B1DJZ4.1 B1DJZ4_9BACL Putative uncharacterized protein Length = 174 Score = 169 bits (429), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 1/167 (0%) Query: 6 DILLVDGYNMIGGWPDLAELSLSGMQGARDRLLDMLADYQAFSGLRVIAVFDAYRVPGLG 65 DILLVDGYNMIG WP L +L ++ ARD+LLDMLADYQ FSG+ V VFDA++VPGLG Sbjct: 6 DILLVDGYNMIGAWPMLEKLKEIDLEEARDKLLDMLADYQGFSGMTVYVVFDAHQVPGLG 65 Query: 66 RSFVQGKVQVFFTKEKETADECIERLVGEFSHRRRQIYVATSDFVEQHVIFAQGXXXXXX 125 ++ K+ + +TKEKETADECIERLV E + RRR ++VATSD VEQHV F +G Sbjct: 66 ATYRHHKLTIVYTKEKETADECIERLVTELTARRRNVFVATSDLVEQHVAFGKGALRLSA 125 Query: 126 XXXXXXXXXXQKQVKKVIEPKNISSTRHSLEEKLPPETRRRLEDWRR 172 +KQ++ + ++I R++L+ L E R +LE RR Sbjct: 126 RELLINIQQNRKQIELTLR-EDIPVKRNTLDGNLSLEVRTKLERLRR 171 >A6CU29.1 A6CU29_9BACI Putative uncharacterized protein Length = 169 Score = 146 bits (369), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 77/167 (46%), Positives = 101/167 (60%), Gaps = 2/167 (1%) Query: 6 DILLVDGYNMIGGWPDLAELSLSGMQGARDRLLDMLADYQAFSGLRVIAVFDAYRVPGLG 65 DILLVDGYN+IG WP+L EL S + ARDRL++ +A+YQ ++G RVI VFDA V G+ Sbjct: 2 DILLVDGYNIIGAWPELRELKNSDLAAARDRLVECMAEYQGYTGYRVIVVFDAQYVNGIE 61 Query: 66 RSFVQGKVQVFFTKEKETADECIERLVGEFSHRRRQIYVATSDFVEQHVIFAQGXXXXXX 125 R + KV VF+T+E ETADE IE+L E ++ R QIYVATSDF EQ IF QG Sbjct: 62 RKYKNYKVDVFYTRENETADERIEKLAIELNNIRTQIYVATSDFTEQWAIFGQGALRKSA 121 Query: 126 XXXXXXXXXXQKQVKKVIEPKNISSTRHSLEEKLPPETRRRLEDWRR 172 QK++++ + K + + S + L E E WRR Sbjct: 122 RELFNEMQTIQKKIERNV--KKTAERKPSSKINLTEEVAEIFEKWRR 166 >Q9KGF1.1 Q9KGF1_BACHD BH0114 protein Length = 170 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/170 (45%), Positives = 104/170 (61%), Gaps = 6/170 (3%) Query: 5 RDILLVDGYNMIGGWPDLAELSLSGMQGARDRLLDMLADYQAFSGLRVIAVFDAYRVPGL 64 R+IL+VDGYNMIG WP+L EL + ARD+L+D LA+YQA++G +VI VFDA+ VPG+ Sbjct: 2 REILIVDGYNMIGAWPELKELKDRDLALARDKLIDRLAEYQAYTGCKVILVFDAHMVPGV 61 Query: 65 GRSFVQGKVQVFFTKEKETADECIERLVGEFSHRRRQIYVATSDFVEQHVIFAQGXXXXX 124 GR++ +++V +T++ ETADE IERLV E QIYVATSD EQ IF G Sbjct: 62 GRTYNNHRIEVIYTRKNETADERIERLVRELKRIDTQIYVATSDLAEQSHIFGSGALRKS 121 Query: 125 XXXXXXXXXXXQKQVKKVIEPKNI--SSTRHSLEEKLPPETRRRLEDWRR 172 K ++K +E N +ST+ +L E+L E WRR Sbjct: 122 ARELYNEMEVTGKGIEKTVEKSNKEHNSTKIALTEELAE----IFEKWRR 167 >C0ZIG0.1 C0ZIG0_BREBN Putative uncharacterized protein Length = 174 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/170 (45%), Positives = 103/170 (60%), Gaps = 3/170 (1%) Query: 5 RDILLVDGYNMIGGWPDLAELS-LSGMQGARDRLLDMLADYQAFSGLRVIAVFDAYRVPG 63 + +L+VDGYN+IG WPDL L M ARD+L+ +A+YQ+++G+ VI VFDAY VPG Sbjct: 7 KQLLIVDGYNIIGAWPDLRLLKDQERMDEARDQLIAKMAEYQSYTGVMVIIVFDAYNVPG 66 Query: 64 LGRSFVQGKVQVFFTKEKETADECIERLVGEFSHRRRQIYVATSDFVEQHVIFAQGXXXX 123 GR +V+V+FTK+KETADE IE+LV +F ++ RQIYVATSD+ Q VIF QG Sbjct: 67 SGRQMEDFQVEVYFTKKKETADEKIEQLVSQFHNKNRQIYVATSDYTSQRVIFGQGALRK 126 Query: 124 XXXXXXXXXXXXQKQVKKVIEPKNISSTRHSLEEKLPPETRRRLEDWRRQ 173 K++KK +E R S L E + E WRR+ Sbjct: 127 SARELLLDMENAGKEIKKQVEK--TQEERFSTRITLNDEIAKIFEKWRRE 174 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 892,601,216 Number of extensions: 29234824 Number of successful extensions: 69361 Number of sequences better than 1.0e-05: 337 Number of HSP's gapped: 69030 Number of HSP's successfully gapped: 337 Length of query: 173 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 47 Effective length of database: 1,873,648,313 Effective search space: 88061470711 Effective search space used: 88061470711 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)