BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0084.p
         (63 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKI6.1 B3KKI6_9BACI Preprotein translocase, SecE subunit            108   2e-22
B1DJZ1.1 B1DJZ1_9BACL Preprotein translocase, SecE subunit             84   4e-15
Q9KGE8.1 SECE_BACHD Preprotein translocase subunit secE                65   2e-09
C5D3Q2.1 C5D3Q2_9BACI Preprotein translocase, SecE subunit             62   2e-08
A4IJH4.1 A4IJH4_GEOTN Preprotein translocase SecE subunit              59   1e-07

>B3KKI6.1 B3KKI6_9BACI Preprotein translocase, SecE subunit
          Length = 63

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/63 (82%), Positives = 59/63 (93%)

Query: 1  VKRSFKSLFSFFTESWSELKKVRWPSRKELKNYTLIVLGTIVVIALYFWVLDIGISAVIE 60
          +KR FKSLFSFF+ESW+ELKKVRWP+RKEL NYTLIVLGTIV + +YFWV+DIGISAVIE
Sbjct: 1  MKRGFKSLFSFFSESWAELKKVRWPNRKELTNYTLIVLGTIVFVTIYFWVVDIGISAVIE 60

Query: 61 AII 63
          AII
Sbjct: 61 AII 63


>B1DJZ1.1 B1DJZ1_9BACL Preprotein translocase, SecE subunit
          Length = 69

 Score = 84.0 bits (206), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 53/63 (84%)

Query: 1  VKRSFKSLFSFFTESWSELKKVRWPSRKELKNYTLIVLGTIVVIALYFWVLDIGISAVIE 60
          +K+SF + FSFF +SW+ELKKVRWP+RKEL +Y+++VL TI  + +YFW+LDIGIS+++ 
Sbjct: 7  LKQSFGTTFSFFADSWAELKKVRWPNRKELTSYSIVVLLTIAFVTIYFWLLDIGISSLVN 66

Query: 61 AII 63
           I+
Sbjct: 67 LIV 69


>Q9KGE8.1 SECE_BACHD Preprotein translocase subunit secE
          Length = 64

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 6  KSLFSFFTESWSELKKVRWPSRKELKNYTLIVLGTIVVIALYFWVLDIGISAVIEAII 63
          K +  FF +  +E+K+V WP+RKEL  YTL+VLGT+  I ++F V+D GISA++  +I
Sbjct: 6  KGIGKFFGDVVAEMKRVSWPTRKELTRYTLVVLGTVAFITVFFAVVDYGISALVRGLI 63


>C5D3Q2.1 C5D3Q2_9BACI Preprotein translocase, SecE subunit
          Length = 60

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 6  KSLFSFFTESWSELKKVRWPSRKELKNYTLIVLGTIVVIALYFWVLDIGISAVIEAI 62
          + + +FF E   E+KKV WPSRKEL NYT IVL T+V   ++F ++D+GIS +I  +
Sbjct: 2  QRIMNFFKEVAREMKKVSWPSRKELVNYTAIVLATVVFFTVFFAIVDLGISKLIRLV 58


>A4IJH4.1 A4IJH4_GEOTN Preprotein translocase SecE subunit
          Length = 60

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 37/53 (69%)

Query: 10 SFFTESWSELKKVRWPSRKELKNYTLIVLGTIVVIALYFWVLDIGISAVIEAI 62
          +FF E   ELKKV WP+RKEL NYT +VL T+    ++F V+D+GIS +I  +
Sbjct: 6  NFFKEVVRELKKVSWPNRKELVNYTAVVLATVAFFTVFFAVIDLGISQLIRLV 58


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 353,667,967
Number of extensions: 10190672
Number of successful extensions: 48886
Number of sequences better than 1.0e-05: 92
Number of HSP's gapped: 48896
Number of HSP's successfully gapped: 92
Length of query: 63
Length of database: 3,060,696,203
Length adjustment: 35
Effective length of query: 28
Effective length of database: 2,730,960,678
Effective search space: 76466898984
Effective search space used: 76466898984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)