BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0082.p
         (141 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKI4.1 B3KKI4_9BACI Ribosomal protein L11                           261   2e-68
C1PDH5.1 C1PDH5_BACCO Ribosomal protein L11                           251   1e-65
C3IDH8.1 C3IDH8_BACTU 50S ribosomal protein L11                       250   3e-65
C3HUD6.1 C3HUD6_BACTU 50S ribosomal protein L11                       250   3e-65
C3HCE1.1 C3HCE1_BACTU 50S ribosomal protein L11                       250   3e-65

>B3KKI4.1 B3KKI4_9BACI Ribosomal protein L11
          Length = 141

 Score =  261 bits (666), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 137/141 (97%)

Query: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60
           MAKKVIK+VKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEI+V
Sbjct: 1   MAKKVIKIVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEISV 60

Query: 61  FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120
           FEDRSFTFITKTPPAAVLLR+AAK+EKGSGEPNKKKVA + R AVR+IAE KMPDLNAAS
Sbjct: 61  FEDRSFTFITKTPPAAVLLRVAAKIEKGSGEPNKKKVATVKRDAVRQIAEQKMPDLNAAS 120

Query: 121 IEAAMRMVEGTARSMGITIED 141
           +EAAM+MVEGTARSMGITIED
Sbjct: 121 VEAAMKMVEGTARSMGITIED 141


>C1PDH5.1 C1PDH5_BACCO Ribosomal protein L11
          Length = 141

 Score =  251 bits (642), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/141 (88%), Positives = 132/141 (93%)

Query: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60
           MAKKV+K+VKLQIPAGKANPAPPVGPALGQAGVNIM FCKEFNARTADQAGLIIPVEITV
Sbjct: 1   MAKKVVKIVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVEITV 60

Query: 61  FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120
           FEDRSFTFITKTPPAAVLL+ AA +E GSGEPN+ KVA + R  VREIAETKMPDLNAAS
Sbjct: 61  FEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRTKVATVKRDKVREIAETKMPDLNAAS 120

Query: 121 IEAAMRMVEGTARSMGITIED 141
           +EAAMRMVEGTARSMGITIED
Sbjct: 121 VEAAMRMVEGTARSMGITIED 141


>C3IDH8.1 C3IDH8_BACTU 50S ribosomal protein L11
          Length = 141

 Score =  250 bits (638), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/141 (88%), Positives = 130/141 (92%)

Query: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60
           MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIM FCKEFNARTADQAGLIIPVEITV
Sbjct: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVEITV 60

Query: 61  FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120
           FEDRSFTFITKTPPAAVLL+  A +E GSGEPN+ KVA + R  VREIAETKMPDLNAAS
Sbjct: 61  FEDRSFTFITKTPPAAVLLKKVAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAAS 120

Query: 121 IEAAMRMVEGTARSMGITIED 141
           +EAAMRMVEGTARSMGI IED
Sbjct: 121 VEAAMRMVEGTARSMGIVIED 141


>C3HUD6.1 C3HUD6_BACTU 50S ribosomal protein L11
          Length = 141

 Score =  250 bits (638), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/141 (88%), Positives = 130/141 (92%)

Query: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60
           MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIM FCKEFNARTADQAGLIIPVEITV
Sbjct: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVEITV 60

Query: 61  FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120
           FEDRSFTFITKTPPAAVLL+  A +E GSGEPN+ KVA + R  VREIAETKMPDLNAAS
Sbjct: 61  FEDRSFTFITKTPPAAVLLKKVAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAAS 120

Query: 121 IEAAMRMVEGTARSMGITIED 141
           +EAAMRMVEGTARSMGI IED
Sbjct: 121 VEAAMRMVEGTARSMGIVIED 141


>C3HCE1.1 C3HCE1_BACTU 50S ribosomal protein L11
          Length = 141

 Score =  250 bits (638), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/141 (88%), Positives = 130/141 (92%)

Query: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITV 60
           MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIM FCKEFNARTADQAGLIIPVEITV
Sbjct: 1   MAKKVIKMVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVEITV 60

Query: 61  FEDRSFTFITKTPPAAVLLRIAAKVEKGSGEPNKKKVAKLGRAAVREIAETKMPDLNAAS 120
           FEDRSFTFITKTPPAAVLL+  A +E GSGEPN+ KVA + R  VREIAETKMPDLNAAS
Sbjct: 61  FEDRSFTFITKTPPAAVLLKKVAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAAS 120

Query: 121 IEAAMRMVEGTARSMGITIED 141
           +EAAMRMVEGTARSMGI IED
Sbjct: 121 VEAAMRMVEGTARSMGIVIED 141


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 723,236,935
Number of extensions: 25819456
Number of successful extensions: 102471
Number of sequences better than 1.0e-05: 1726
Number of HSP's gapped: 101499
Number of HSP's successfully gapped: 1726
Length of query: 141
Length of database: 3,060,696,203
Length adjustment: 104
Effective length of query: 37
Effective length of database: 2,080,910,643
Effective search space: 76993693791
Effective search space used: 76993693791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)