BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0081.p (244 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJY8.1 B1DJY8_9BACL Ribosomal protein L1 370 e-101 C0ZIG6.1 RL1_BREBN 50S ribosomal protein L1 301 4e-80 B1I1L3.1 RL1_DESAP 50S ribosomal protein L1 299 1e-79 C3GV72.1 C3GV72_BACTU 50S ribosomal protein L1 298 4e-79 C3EET6.1 C3EET6_BACTK 50S ribosomal protein L1 298 4e-79 >B1DJY8.1 B1DJY8_9BACL Ribosomal protein L1 Length = 230 Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust. Identities = 182/230 (79%), Positives = 194/230 (84%) Query: 15 MAKHGKKYQESAKLINSEATYEPSEAVELVKKAATAKFDETVEAAVRLGVDPRKQDQAVR 74 MAKHGKKY E+AKLINSEATYE EA+ELVKKAATAKFDE+VE AVRLGVDPRKQDQAVR Sbjct: 1 MAKHGKKYVEAAKLINSEATYESLEAIELVKKAATAKFDESVEVAVRLGVDPRKQDQAVR 60 Query: 75 GVVVLPHGTGKTQRVLVFXXXXXXXXXXXXXXDYVGDQDMINKIQQGWFEFDVCVATPDM 134 GVVVLPHGTGKT+RVLVF D+VGD DMINKIQQGWFEFDVCVATPDM Sbjct: 61 GVVVLPHGTGKTKRVLVFAKGDKAKEAEAAGADFVGDSDMINKIQQGWFEFDVCVATPDM 120 Query: 135 MSEVXXXXXXXXXXXXMPNPKAGTVTFDVTKAVQEIKAGKIEYRLDKAGQIHAPIGKVSF 194 M+EV MPNPKAGTVTFDVTKAVQEIKAGKIEYRLDKAGQIHAPIGKVSF Sbjct: 121 MAEVGKLGRILGGKGLMPNPKAGTVTFDVTKAVQEIKAGKIEYRLDKAGQIHAPIGKVSF 180 Query: 195 NAEQLNDNLKALIDALNRAKPAAAKGVYLKGIAVSSTMGPSARVNTTAFR 244 +AE+LN+NLK+LIDALNRAKPAAAKGVYLK I+VSSTMGP ARVN +R Sbjct: 181 DAEKLNENLKSLIDALNRAKPAAAKGVYLKNISVSSTMGPGARVNAAVYR 230 >C0ZIG6.1 RL1_BREBN 50S ribosomal protein L1 Length = 227 Score = 301 bits (771), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 148/224 (66%), Positives = 167/224 (74%) Query: 15 MAKHGKKYQESAKLINSEATYEPSEAVELVKKAATAKFDETVEAAVRLGVDPRKQDQAVR 74 MAK GKKYQ++ KL++ YE E VELVKKAATAKFDETVE A RLGVDP++ DQ +R Sbjct: 1 MAKKGKKYQDAVKLVDKNKVYEVVEGVELVKKAATAKFDETVEVAFRLGVDPKRADQQIR 60 Query: 75 GVVVLPHGTGKTQRVLVFXXXXXXXXXXXXXXDYVGDQDMINKIQQGWFEFDVCVATPDM 134 G VVLPHGTGK QRVLVF D+VGD DMI KIQ GWF+FDV VATPDM Sbjct: 61 GAVVLPHGTGKVQRVLVFAKGEKAKDAEAAGADFVGDADMIAKIQGGWFDFDVVVATPDM 120 Query: 135 MSEVXXXXXXXXXXXXMPNPKAGTVTFDVTKAVQEIKAGKIEYRLDKAGQIHAPIGKVSF 194 M EV MPNPK GTVTFDVTKAV EIKAGKIEYR+DKAG IHAPIGK SF Sbjct: 121 MGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKIEYRVDKAGNIHAPIGKASF 180 Query: 195 NAEQLNDNLKALIDALNRAKPAAAKGVYLKGIAVSSTMGPSARV 238 +A++L +NL AL +ALNRAKPAAAKGVY++ + +SSTMGP RV Sbjct: 181 DADKLVENLAALTEALNRAKPAAAKGVYMRNVTLSSTMGPGVRV 224 >B1I1L3.1 RL1_DESAP 50S ribosomal protein L1 Length = 231 Score = 299 bits (766), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 148/229 (64%), Positives = 168/229 (73%) Query: 15 MAKHGKKYQESAKLINSEATYEPSEAVELVKKAATAKFDETVEAAVRLGVDPRKQDQAVR 74 M KHGKKY E+AK ++SE YE EA+ELV+K A AKFDETVEAAV+LGVDPR DQ VR Sbjct: 1 MPKHGKKYVEAAKQVDSEKQYEVREALELVRKLAPAKFDETVEAAVKLGVDPRHADQQVR 60 Query: 75 GVVVLPHGTGKTQRVLVFXXXXXXXXXXXXXXDYVGDQDMINKIQQGWFEFDVCVATPDM 134 G VVLPHGTGKT+ VLVF DYVG ++M+ KIQ GW EFDV +ATPDM Sbjct: 61 GAVVLPHGTGKTRTVLVFAKGEKVTEAEKAGADYVGGEEMVAKIQGGWMEFDVAIATPDM 120 Query: 135 MSEVXXXXXXXXXXXXMPNPKAGTVTFDVTKAVQEIKAGKIEYRLDKAGQIHAPIGKVSF 194 MS V MPNPK GTVTFD+ +AV E+KAGKI+YR+DKAG IHAPIGKVSF Sbjct: 121 MSAVGKIGRILGPRGLMPNPKTGTVTFDIARAVAEVKAGKIQYRVDKAGNIHAPIGKVSF 180 Query: 195 NAEQLNDNLKALIDALNRAKPAAAKGVYLKGIAVSSTMGPSARVNTTAF 243 E+L +NLK LIDAL RAKPAAAKG YL+GI V+STMGP RVNT F Sbjct: 181 EVEKLEENLKTLIDALIRAKPAAAKGQYLRGIVVTSTMGPGVRVNTRKF 229 >C3GV72.1 C3GV72_BACTU 50S ribosomal protein L1 Length = 245 Score = 298 bits (762), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 150/244 (61%), Positives = 170/244 (69%), Gaps = 1/244 (0%) Query: 1 VGGISANTTKEEHF-MAKHGKKYQESAKLINSEATYEPSEAVELVKKAATAKFDETVEAA 59 +GG SA TT EE MAK GKKY E+AKL++ A Y +EAVELVKK TAKFD TVEAA Sbjct: 1 MGGYSAKTTFEEEIKMAKRGKKYVEAAKLVDRAAAYSATEAVELVKKTNTAKFDATVEAA 60 Query: 60 VRLGVDPRKQDQAVRGVVVLPHGTGKTQRVLVFXXXXXXXXXXXXXXDYVGDQDMINKIQ 119 RLGVDP+K DQ +RG VVLPHGTGK QRVLVF D+VGD D I KIQ Sbjct: 61 FRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDTDYIGKIQ 120 Query: 120 QGWFEFDVCVATPDMMSEVXXXXXXXXXXXXMPNPKAGTVTFDVTKAVQEIKAGKIEYRL 179 QGWF+FDV VATPDMM EV MPNPK GTVTFDVTKAV EIKAGK+EYR+ Sbjct: 121 QGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRV 180 Query: 180 DKAGQIHAPIGKVSFNAEQLNDNLKALIDALNRAKPAAAKGVYLKGIAVSSTMGPSARVN 239 DKAG IH PIGKVSF +L +N K + D L + KPAAAKG Y+K + V+STMGP RV+ Sbjct: 181 DKAGNIHVPIGKVSFEDAKLVENFKTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVD 240 Query: 240 TTAF 243 + Sbjct: 241 VSTL 244 >C3EET6.1 C3EET6_BACTK 50S ribosomal protein L1 Length = 245 Score = 298 bits (762), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 150/244 (61%), Positives = 170/244 (69%), Gaps = 1/244 (0%) Query: 1 VGGISANTTKEEHF-MAKHGKKYQESAKLINSEATYEPSEAVELVKKAATAKFDETVEAA 59 +GG SA TT EE MAK GKKY E+AKL++ A Y +EAVELVKK TAKFD TVEAA Sbjct: 1 MGGYSAKTTFEEEIKMAKRGKKYVEAAKLVDRAAAYSATEAVELVKKTNTAKFDATVEAA 60 Query: 60 VRLGVDPRKQDQAVRGVVVLPHGTGKTQRVLVFXXXXXXXXXXXXXXDYVGDQDMINKIQ 119 RLGVDP+K DQ +RG VVLPHGTGK QRVLVF D+VGD D I KIQ Sbjct: 61 FRLGVDPKKADQQIRGAVVLPHGTGKVQRVLVFAKGEKAKEAEAAGADFVGDTDYIGKIQ 120 Query: 120 QGWFEFDVCVATPDMMSEVXXXXXXXXXXXXMPNPKAGTVTFDVTKAVQEIKAGKIEYRL 179 QGWF+FDV VATPDMM EV MPNPK GTVTFDVTKAV EIKAGK+EYR+ Sbjct: 121 QGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRV 180 Query: 180 DKAGQIHAPIGKVSFNAEQLNDNLKALIDALNRAKPAAAKGVYLKGIAVSSTMGPSARVN 239 DKAG IH PIGKVSF +L +N K + D L + KPAAAKG Y+K + V+STMGP RV+ Sbjct: 181 DKAGNIHVPIGKVSFEDAKLVENFKTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVD 240 Query: 240 TTAF 243 + Sbjct: 241 VSTL 244 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,137,087,954 Number of extensions: 35834015 Number of successful extensions: 87368 Number of sequences better than 1.0e-05: 1576 Number of HSP's gapped: 87031 Number of HSP's successfully gapped: 1576 Length of query: 244 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 112 Effective length of database: 1,817,122,223 Effective search space: 203517688976 Effective search space used: 203517688976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)