BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0080.p (167 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKI1.1 B3KKI1_9BACI 50S ribosomal protein L10 239 4e-62 B1DJY7.1 B1DJY7_9BACL 50S ribosomal protein L10 203 5e-51 A6CUA2.1 A6CUA2_9BACI 50S ribosomal protein L10 189 7e-47 B1HMZ9.1 RL10_LYSSC 50S ribosomal protein L10 188 1e-46 C0ZIG7.1 C0ZIG7_BREBN 50S ribosomal protein L10 188 1e-46 >B3KKI1.1 B3KKI1_9BACI 50S ribosomal protein L10 Length = 167 Score = 239 bits (611), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 126/167 (75%), Positives = 135/167 (80%) Query: 1 LANAKVIQAKQDAVDVVTGKLQNSVSTVVADYRGLNVSQVTELRKQLREAGVDFQVLKNX 60 +ANAKVIQAKQ+AVDVV KL+ SVSTVVADYRGLNV+QVTELRKQLREAGV+FQVLKN Sbjct: 1 MANAKVIQAKQEAVDVVAAKLRESVSTVVADYRGLNVAQVTELRKQLREAGVEFQVLKNT 60 Query: 61 XXXXXXXXXXXXXXXXXXXGPTAVAFSETDAVVAAKILNDFAKKNDALKLKGGVVEGRVI 120 GPTAVAF DAV AKILNDFAKKNDALKLKGGVVEGRVI Sbjct: 61 LLRRATAAAELTDLDEVLTGPTAVAFGTNDAVAPAKILNDFAKKNDALKLKGGVVEGRVI 120 Query: 121 DADQLKALAELPSREGLLSMLLSVLQAPMRNFALAVKAVADKEEQSA 167 ++KALAELPSREGLLSMLLSVLQAP+RNFALAVKAVA+KEEQ A Sbjct: 121 GESEIKALAELPSREGLLSMLLSVLQAPVRNFALAVKAVAEKEEQGA 167 >B1DJY7.1 B1DJY7_9BACL 50S ribosomal protein L10 Length = 167 Score = 203 bits (516), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 116/167 (69%), Positives = 131/167 (78%) Query: 1 LANAKVIQAKQDAVDVVTGKLQNSVSTVVADYRGLNVSQVTELRKQLREAGVDFQVLKNX 60 +AN K+IQ KQ AV+ +T KL+ S STVVADYRGLNV+QVTELRKQLREAGV+FQVLKN Sbjct: 1 MANVKIIQEKQQAVEEITAKLRESSSTVVADYRGLNVAQVTELRKQLREAGVEFQVLKNS 60 Query: 61 XXXXXXXXXXXXXXXXXXXGPTAVAFSETDAVVAAKILNDFAKKNDALKLKGGVVEGRVI 120 GPTA+AFS DAV AKILNDFAKKNDALKLKGGVVEG+V+ Sbjct: 61 LVRRATEAAELSDLNSILVGPTAIAFSVNDAVAPAKILNDFAKKNDALKLKGGVVEGKVV 120 Query: 121 DADQLKALAELPSREGLLSMLLSVLQAPMRNFALAVKAVADKEEQSA 167 A ++KALAELPSREGLLSMLLSVLQAPMRNFALAVKAV +++E A Sbjct: 121 GAQEIKALAELPSREGLLSMLLSVLQAPMRNFALAVKAVGEQKEAQA 167 >A6CUA2.1 A6CUA2_9BACI 50S ribosomal protein L10 Length = 166 Score = 189 bits (480), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 94/165 (56%), Positives = 122/165 (73%), Gaps = 1/165 (0%) Query: 4 AKVIQAKQDAVDVVTGKLQNSVSTVVADYRGLNVSQVTELRKQLREAGVDFQVLKNXXXX 63 + ++ K+ VD ++ KL+NSVST++ DYRGL+VS+VTELRKQLREAG+DF+V KN Sbjct: 2 SSILDQKKQIVDEISDKLKNSVSTIIVDYRGLDVSEVTELRKQLREAGIDFKVYKNTMTR 61 Query: 64 XXXXXXXXXXXXXXXXGPTAVAFSETDAVVAAKILNDFAKKNDALKLKGGVVEGRVIDAD 123 GP A+AFS + V AKILN+FAK+++AL++K G++EG V + Sbjct: 62 RAAEAAGFEGLNEVLTGPNAIAFSTEEVVAPAKILNNFAKEHEALEIKAGIIEGTVTSVE 121 Query: 124 QLKALAELPSREGLLSMLLSVLQAPMRNFALAVKAVAD-KEEQSA 167 ++KA+AELP+REGLLSMLLSVLQAPMRNFALA KAVAD KEEQ A Sbjct: 122 EVKAIAELPNREGLLSMLLSVLQAPMRNFALATKAVADQKEEQGA 166 >B1HMZ9.1 RL10_LYSSC 50S ribosomal protein L10 Length = 166 Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 99/165 (60%), Positives = 118/165 (71%), Gaps = 1/165 (0%) Query: 4 AKVIQAKQDAVDVVTGKLQNSVSTVVADYRGLNVSQVTELRKQLREAGVDFQVLKNXXXX 63 +K I+ KQ V +T K QN+ S VV DYRGLNV+QVTELRKQLREAGV+F+V KN Sbjct: 2 SKAIENKQVQVQEITEKFQNASSVVVVDYRGLNVAQVTELRKQLREAGVEFKVYKNTLTR 61 Query: 64 XXXXXXXXXXXXXXXXGPTAVAFSETDAVVAAKILNDFAKKNDALKLKGGVVEGRVIDAD 123 GP A+AFS D V AKI+N+FAKKN+AL++K G++EG + + Sbjct: 62 RAAEAAGLEGINDVLVGPNAIAFSNEDVVAPAKIINEFAKKNEALEIKAGIIEGTISSVE 121 Query: 124 QLKALAELPSREGLLSMLLSVLQAPMRNFALAVKAVAD-KEEQSA 167 +KALAELPSREGLLSMLLSVLQAP+RNFALA KAVAD KEEQ A Sbjct: 122 DVKALAELPSREGLLSMLLSVLQAPVRNFALATKAVADQKEEQGA 166 >C0ZIG7.1 C0ZIG7_BREBN 50S ribosomal protein L10 Length = 171 Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 94/157 (59%), Positives = 119/157 (75%) Query: 8 QAKQDAVDVVTGKLQNSVSTVVADYRGLNVSQVTELRKQLREAGVDFQVLKNXXXXXXXX 67 + K A++ + KL+ S +TVVADYRGL V+QVTELRKQLREAGV+FQVLKN Sbjct: 11 EEKVQAINEIAAKLRESQTTVVADYRGLTVAQVTELRKQLREAGVEFQVLKNSLTRLATE 70 Query: 68 XXXXXXXXXXXXGPTAVAFSETDAVVAAKILNDFAKKNDALKLKGGVVEGRVIDADQLKA 127 GP A+AFS+ D + AK++ +FAKKND L++KGGV+EG+V+DA+Q+KA Sbjct: 71 KESLTELDQYLTGPNALAFSKDDIIAPAKVIAEFAKKNDKLEIKGGVIEGKVVDAEQIKA 130 Query: 128 LAELPSREGLLSMLLSVLQAPMRNFALAVKAVADKEE 164 LA LP+REGLLSMLLSVLQAPMRN ALAVKAVA+++E Sbjct: 131 LASLPNREGLLSMLLSVLQAPMRNVALAVKAVAEQKE 167 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.128 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 667,421,986 Number of extensions: 20213895 Number of successful extensions: 56294 Number of sequences better than 1.0e-05: 1418 Number of HSP's gapped: 54864 Number of HSP's successfully gapped: 1418 Length of query: 167 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 42 Effective length of database: 1,883,069,328 Effective search space: 79088911776 Effective search space used: 79088911776 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)