BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0079.p
         (120 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKI0.1 B3KKI0_9BACI Ribosomal protein L7/L12                        164   2e-39
B1DJY6.1 B1DJY6_9BACL Ribosomal protein L7/L12                        149   8e-35
C0ZIG8.1 RL7_BREBN 50S ribosomal protein L7/L12                       146   6e-34
B7DS03.1 B7DS03_9BACL Ribosomal protein L7/L12                        144   2e-33
C1PXD7.1 C1PXD7_ALIAC LSU ribosomal protein L12P                      142   7e-33

>B3KKI0.1 B3KKI0_9BACI Ribosomal protein L7/L12
          Length = 120

 Score =  164 bits (416), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 98/120 (81%)

Query: 1   MSKETILEEIKGMSVLELNDLVKAIEEEFXXXXXXXXXXXXXXXXXXXXEQSEFDVILTS 60
           MSKE ILE IKGMSVLELNDLVKAIEEEF                    EQSEFDVILTS
Sbjct: 1   MSKEQILEAIKGMSVLELNDLVKAIEEEFGVTAAAPVAVVGGAGAAAEAEQSEFDVILTS 60

Query: 61  AGASKINVIKIVREITGLGLKEAKDLVDNAPKPIKEKVSKEDAEAVKAKLEEAGAAVELK 120
           AGASKINVIK+VREITGLGLKEAK+LVDNAPKP+KEKV+KE+AEAVKAKLEEAGA+VE+K
Sbjct: 61  AGASKINVIKVVREITGLGLKEAKELVDNAPKPLKEKVAKEEAEAVKAKLEEAGASVEVK 120


>B1DJY6.1 B1DJY6_9BACL Ribosomal protein L7/L12
          Length = 119

 Score =  149 bits (376), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 94/120 (78%), Gaps = 1/120 (0%)

Query: 1   MSKETILEEIKGMSVLELNDLVKAIEEEFXXXXXXXXXXXXXXXXXXXXEQSEFDVILTS 60
           MSKE ILE IK M+VLELNDLVKAIEEEF                    EQ+EFDVIL +
Sbjct: 1   MSKEQILEAIKVMTVLELNDLVKAIEEEFGVTAAAPVAVVAGGAAEVA-EQTEFDVILNN 59

Query: 61  AGASKINVIKIVREITGLGLKEAKDLVDNAPKPIKEKVSKEDAEAVKAKLEEAGAAVELK 120
           AGASKINVIK+VREITGLGLKEAKDLVD APK IKEKV+KE+AEAVKAKLEEAGAAVE+K
Sbjct: 60  AGASKINVIKVVREITGLGLKEAKDLVDGAPKAIKEKVAKEEAEAVKAKLEEAGAAVEVK 119


>C0ZIG8.1 RL7_BREBN 50S ribosomal protein L7/L12
          Length = 120

 Score =  146 bits (368), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 91/120 (75%)

Query: 1   MSKETILEEIKGMSVLELNDLVKAIEEEFXXXXXXXXXXXXXXXXXXXXEQSEFDVILTS 60
           MSK+ ILE IKGMSVLELNDLVKAIEEEF                    EQ+EF V L S
Sbjct: 1   MSKDQILEAIKGMSVLELNDLVKAIEEEFGVTAAAPVAVVAGGGAEAAAEQTEFTVNLVS 60

Query: 61  AGASKINVIKIVREITGLGLKEAKDLVDNAPKPIKEKVSKEDAEAVKAKLEEAGAAVELK 120
            GASKINVIK+VRE+TGLGLKEAKDLVDNAPK +KE VSK++AEA+KAKLEEAGA VE+K
Sbjct: 61  GGASKINVIKVVRELTGLGLKEAKDLVDNAPKTLKEGVSKDEAEALKAKLEEAGAQVEVK 120


>B7DS03.1 B7DS03_9BACL Ribosomal protein L7/L12
          Length = 123

 Score =  144 bits (364), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 93/123 (75%), Gaps = 3/123 (2%)

Query: 1   MSKETILEEIKGMSVLELNDLVKAIEEEFXXXXXXXXXXXXXXXXXXXX---EQSEFDVI 57
           M+   ILE +K M+VLELN+LVKAIEEEF                       EQ+EFDVI
Sbjct: 1   MTTAEILEAVKNMTVLELNELVKAIEEEFGVTAAAPVAFAGAAPGAGEAAQAEQTEFDVI 60

Query: 58  LTSAGASKINVIKIVREITGLGLKEAKDLVDNAPKPIKEKVSKEDAEAVKAKLEEAGAAV 117
           L SAGASKINVIK+VREITGLGLKEAKDLVD APKPIKEKVSKE+AE++KAKLEEAGA+V
Sbjct: 61  LASAGASKINVIKVVREITGLGLKEAKDLVDGAPKPIKEKVSKEEAESIKAKLEEAGASV 120

Query: 118 ELK 120
           E+K
Sbjct: 121 EIK 123


>C1PXD7.1 C1PXD7_ALIAC LSU ribosomal protein L12P
          Length = 123

 Score =  142 bits (359), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 93/123 (75%), Gaps = 3/123 (2%)

Query: 1   MSKETILEEIKGMSVLELNDLVKAIEEEFXXXXXXXXXXXXXXXXXXXX---EQSEFDVI 57
           M+   ILE +K M+VLELN+LVKAIEEEF                       EQ+EFDVI
Sbjct: 1   MTTAEILEAVKNMTVLELNELVKAIEEEFGVTAAAPVAFAGAAPGAGEAAQAEQTEFDVI 60

Query: 58  LTSAGASKINVIKIVREITGLGLKEAKDLVDNAPKPIKEKVSKEDAEAVKAKLEEAGAAV 117
           L SAGASKINVIK+VREITGLGLKEAK+LVD APKPIKEKVSKE+AE++KAKLEEAGA+V
Sbjct: 61  LASAGASKINVIKVVREITGLGLKEAKELVDGAPKPIKEKVSKEEAESIKAKLEEAGASV 120

Query: 118 ELK 120
           E+K
Sbjct: 121 EIK 123


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.306    0.127    0.312 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 473,598,533
Number of extensions: 13753382
Number of successful extensions: 45015
Number of sequences better than 1.0e-05: 1696
Number of HSP's gapped: 43534
Number of HSP's successfully gapped: 1696
Length of query: 120
Length of database: 3,060,696,203
Length adjustment: 86
Effective length of query: 34
Effective length of database: 2,250,488,913
Effective search space: 76516623042
Effective search space used: 76516623042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 126 (53.1 bits)