BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0078.p (198 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKH9.1 B3KKH9_9BACI Methyltransferase small 288 2e-76 B1DJY5.1 B1DJY5_9BACL Methyltransferase small 286 1e-75 C0ZIG9.1 C0ZIG9_BREBN Putative uncharacterized protein 239 7e-62 Q2B2K5.1 Q2B2K5_9BACI Putative uncharacterized protein 233 8e-60 C1PDH0.1 C1PDH0_BACCO Methyltransferase small 229 1e-58 >B3KKH9.1 B3KKH9_9BACI Methyltransferase small Length = 201 Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 134/197 (68%), Positives = 161/197 (81%) Query: 2 SQHYYSQQPDARHDRRTIDTVLRGKSLRFTSDAGVFSKGDIDYGSRVLIEAMEIPDGSAV 61 +QHYYS QP+ HDR+ + T LRG+S SDAGVFSKG +DYGS+VLI+AM+ + V Sbjct: 3 NQHYYSNQPEIAHDRKELKTELRGQSFSLVSDAGVFSKGGVDYGSKVLIDAMDFGQDAQV 62 Query: 62 LDVGCGYGPIGISAAYLAPKGHVTLIDINSRAVELARENARNNGVHNVTVMESDVLSAVK 121 LDVGCGYGPIG++AA +A +GHVT+IDINSRAVELA+ENA+ NG+ NVT++ESD+ AVK Sbjct: 63 LDVGCGYGPIGLTAARMASQGHVTMIDINSRAVELAKENAKRNGIINVTILESDLFEAVK 122 Query: 122 GQKFDVIVTNPPIRAGKAVVHQIFEEAYDHLNEGGTLWLVIQKKQGAPSAAAKLESLFGD 181 Q+FDV++TNPPIRAGK VH IFEE++ HL E G LW+VIQKKQGAPSA AKLESLF Sbjct: 123 DQQFDVVLTNPPIRAGKETVHAIFEESWKHLRENGQLWVVIQKKQGAPSAKAKLESLFYQ 182 Query: 182 VEEVGKDKGYRIIKARK 198 VEEV KDKGYRI KA K Sbjct: 183 VEEVTKDKGYRIFKATK 199 >B1DJY5.1 B1DJY5_9BACL Methyltransferase small Length = 201 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 134/198 (67%), Positives = 163/198 (82%) Query: 1 MSQHYYSQQPDARHDRRTIDTVLRGKSLRFTSDAGVFSKGDIDYGSRVLIEAMEIPDGSA 60 MS HYYSQ P +HDR+ + LRG SLRF +DAGVFSK +DYGSRVL++A+ + + Sbjct: 1 MSDHYYSQTPGVKHDRQIHEANLRGYSLRFMTDAGVFSKSGVDYGSRVLLDALVLAPSAQ 60 Query: 61 VLDVGCGYGPIGISAAYLAPKGHVTLIDINSRAVELARENARNNGVHNVTVMESDVLSAV 120 VLDVGCGYGPIG++AA LAP+GHVT+IDIN RAVEL++ENA+ NGV NVT+++SD+ +V Sbjct: 61 VLDVGCGYGPIGLTAAKLAPEGHVTMIDINERAVELSKENAKLNGVSNVTIVQSDIYESV 120 Query: 121 KGQKFDVIVTNPPIRAGKAVVHQIFEEAYDHLNEGGTLWLVIQKKQGAPSAAAKLESLFG 180 K ++DVI+TNPPIRAGK VVH+IFEE Y+ LN GG +W+VIQKKQGAPSA AKLESLFG Sbjct: 121 KNNRYDVILTNPPIRAGKQVVHRIFEEGYNLLNPGGKMWVVIQKKQGAPSAEAKLESLFG 180 Query: 181 DVEEVGKDKGYRIIKARK 198 DVEEV KDKGYRI A K Sbjct: 181 DVEEVTKDKGYRIFLATK 198 >C0ZIG9.1 C0ZIG9_BREBN Putative uncharacterized protein Length = 198 Score = 239 bits (611), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 116/198 (58%), Positives = 145/198 (73%) Query: 1 MSQHYYSQQPDARHDRRTIDTVLRGKSLRFTSDAGVFSKGDIDYGSRVLIEAMEIPDGSA 60 M+ HYY+ QP A HD + LR RF +DAGVFS+ ID+GS +LIE MEI + Sbjct: 1 MADHYYTNQPGAAHDEQQFTFKLRDNEFRFITDAGVFSRDRIDFGSVLLIENMEINSHAR 60 Query: 61 VLDVGCGYGPIGISAAYLAPKGHVTLIDINSRAVELARENARNNGVHNVTVMESDVLSAV 120 VLDVGCGYGP+G++AA LA G VT+ID+N RAV LAR NA NG+ NV V SDV S V Sbjct: 61 VLDVGCGYGPMGLTAAKLADHGRVTMIDVNERAVNLARRNAEANGIKNVEVRVSDVYSGV 120 Query: 121 KGQKFDVIVTNPPIRAGKAVVHQIFEEAYDHLNEGGTLWLVIQKKQGAPSAAAKLESLFG 180 +G++FDVI+TNPPIRAGK +VH+IF E YD L EGG +W+VIQKKQGAPSA KL+ ++ Sbjct: 121 QGEQFDVILTNPPIRAGKEIVHRIFVEGYDLLVEGGEMWVVIQKKQGAPSALKKLQEVYR 180 Query: 181 DVEEVGKDKGYRIIKARK 198 +V EV ++KGY I +A K Sbjct: 181 EVIEVDREKGYHIFRAIK 198 >Q2B2K5.1 Q2B2K5_9BACI Putative uncharacterized protein Length = 200 Score = 233 bits (593), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 112/199 (56%), Positives = 144/199 (72%), Gaps = 1/199 (0%) Query: 1 MSQHYYSQQPDARHDRRTIDTVLRGKSLRFTSDAGVFSKGDIDYGSRVLIEAMEIPDGSA 60 M++HYYS+ D D LRG S RF +D GVFSK ++D+GSR+L+EA ++P+ Sbjct: 1 MTEHYYSRTSKTESDPAYWDFSLRGHSFRFKTDNGVFSKKEVDFGSRLLVEAFKLPELEG 60 Query: 61 -VLDVGCGYGPIGISAAYLAPKGHVTLIDINSRAVELARENARNNGVHNVTVMESDVLSA 119 +LDVGCGYGPIG+S A P+ V ++D+N RA+ELA+ENA N V N + ESD L+ Sbjct: 61 NILDVGCGYGPIGLSIAKSFPERTVHMVDVNLRAIELAKENAAGNSVSNAAIYESDRLTG 120 Query: 120 VKGQKFDVIVTNPPIRAGKAVVHQIFEEAYDHLNEGGTLWLVIQKKQGAPSAAAKLESLF 179 V G KF I+TNPPIRAGK VVH IFE++++H+ GG LW+VIQKKQGAPSA KL+SLF Sbjct: 121 VGGGKFAAILTNPPIRAGKQVVHDIFEQSFEHMLTGGELWVVIQKKQGAPSAIEKLDSLF 180 Query: 180 GDVEEVGKDKGYRIIKARK 198 DVE V K KGY I+KA+K Sbjct: 181 SDVETVEKKKGYFILKAKK 199 >C1PDH0.1 C1PDH0_BACCO Methyltransferase small Length = 200 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 106/199 (53%), Positives = 146/199 (73%), Gaps = 1/199 (0%) Query: 1 MSQHYYSQQPDARHDRRTIDTVLRGKSLRFTSDAGVFSKGDIDYGSRVLIEAMEIPDGSA 60 M++HYYSQ P+A+H LRG + F +D GVFSK ++D+GSRVL++ + +P+ Sbjct: 1 MAEHYYSQNPEAKHQPIDFTFTLRGHTFHFQTDQGVFSKKEVDFGSRVLLDLVTMPETEG 60 Query: 61 -VLDVGCGYGPIGISAAYLAPKGHVTLIDINSRAVELARENARNNGVHNVTVMESDVLSA 119 VLD+GCGYGPIG++ A P HV ++DIN+RAVELA +NA N + NV++ ES++ Sbjct: 61 PVLDMGCGYGPIGLALATSFPGRHVHMVDINTRAVELAEKNAARNHISNVSIYESNLFEN 120 Query: 120 VKGQKFDVIVTNPPIRAGKAVVHQIFEEAYDHLNEGGTLWLVIQKKQGAPSAAAKLESLF 179 VK F +I TNPPIRAGK +VH+IFEE+Y +L + G LW+VI+KKQGAPSA KLES+F Sbjct: 121 VKSGPFALIATNPPIRAGKQIVHRIFEESYQYLAKNGELWVVIRKKQGAPSARKKLESIF 180 Query: 180 GDVEEVGKDKGYRIIKARK 198 +V+ VGK+KGY + KA+K Sbjct: 181 DEVDCVGKEKGYFVFKAKK 199 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,193,856,699 Number of extensions: 48632578 Number of successful extensions: 163338 Number of sequences better than 1.0e-05: 1828 Number of HSP's gapped: 164281 Number of HSP's successfully gapped: 1828 Length of query: 198 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 69 Effective length of database: 1,845,385,268 Effective search space: 127331583492 Effective search space used: 127331583492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)