BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0077.p (1120 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKH8.1 B3KKH8_9BACI DNA-directed RNA polymerase EC=2.7.7.6 2151 0.0 B1DJY4.1 B1DJY4_9BACL DNA-directed RNA polymerase EC=2.7.7.6 2089 0.0 C0ZIH0.1 RPOB_BREBN DNA-directed RNA polymerase subunit beta EC=... 1895 0.0 Q5WLS0.1 RPOB_BACSK DNA-directed RNA polymerase subunit beta EC=... 1892 0.0 Q9Z9M2.1 RPOB_BACHD DNA-directed RNA polymerase subunit beta EC=... 1887 0.0 >B3KKH8.1 B3KKH8_9BACI DNA-directed RNA polymerase EC=2.7.7.6 Length = 1187 Score = 2151 bits (5573), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1053/1120 (94%), Positives = 1093/1120 (97%) Query: 1 VLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTET 60 VLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTET Sbjct: 68 VLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTET 127 Query: 61 GTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYV 120 GTFIINGAERVIVSQLVRSPSVYFSTKVDKNGK TYTATVIPNRGAWLELE DAKDI+YV Sbjct: 128 GTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKTTYTATVIPNRGAWLELEMDAKDIIYV 187 Query: 121 RIDRTRKIPVTVLLRALGFGSDAEILELLGNDEYIRNTLDKDNTDSTEKALIEIYERLRP 180 RIDRTRKIPVTVLLRALGFG+DAEIL+LLGNDEYI+NTLDKDNTDSTEKALIEIYERLRP Sbjct: 188 RIDRTRKIPVTVLLRALGFGTDAEILDLLGNDEYIQNTLDKDNTDSTEKALIEIYERLRP 247 Query: 181 GEPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQPLVDESTGEI 240 GEPPTL+NAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLA+ L+D TGEI Sbjct: 248 GEPPTLENAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAESLIDIDTGEI 307 Query: 241 LAESGQMVDRRLLDELIPYFEKDVAAKTYRVTGGVLDSEDIPLQTIDVFSPIEEGRVIKL 300 +AE+GQ VDRRLLDE++PY EK V K Y V GGV+DSEDIPLQTIDVFSPIE+G+V+K+ Sbjct: 308 VAEAGQTVDRRLLDEIMPYLEKSVGFKNYHVAGGVMDSEDIPLQTIDVFSPIEDGKVVKV 367 Query: 301 IANGNIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRIG 360 IAN NIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRIG Sbjct: 368 IANANIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRIG 427 Query: 361 LSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK 420 LSRMERVVRERMSIQDAN ITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK Sbjct: 428 LSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK 487 Query: 421 RRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGFI 480 RRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGFI Sbjct: 488 RRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGFI 547 Query: 481 EAPYRWVDPKTGKVTEHIDYLTADEEDNYVVAQANVQIDEDGTFKEDMVIVRYNKDSDNI 540 EAPYRWVDPKTGKVT+ IDYLTADEEDNY+VAQAN +++EDGTF ++MVIVRYNK SDNI Sbjct: 548 EAPYRWVDPKTGKVTDQIDYLTADEEDNYIVAQANAELNEDGTFADEMVIVRYNKQSDNI 607 Query: 541 TTMPSNRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGT 600 MPS+RVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGT Sbjct: 608 LPMPSDRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGT 667 Query: 601 GMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVEMVEGKEVKGDIVKYKLHKFMRSNQ 660 GMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVE ++G+EVKGDIVKYKLHKFMRSNQ Sbjct: 668 GMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVENIDGQEVKGDIVKYKLHKFMRSNQ 727 Query: 661 GTCINQRPLAKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSEK 720 GTCINQRP+ KRGD++KKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSEK Sbjct: 728 GTCINQRPIVKRGDVIKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSEK 787 Query: 721 LVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEINAGD 780 LVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEAL+NLDERGIIRIGAEI+AGD Sbjct: 788 LVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKNLDERGIIRIGAEISAGD 847 Query: 781 ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGDE 840 ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGDE Sbjct: 848 ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGDE 907 Query: 841 LPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNPL 900 LPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNPL Sbjct: 908 LPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNPL 967 Query: 901 GVPSRMNIGQVLEVHLGMAALRLGIHVATPVFDGAREYDVFDTMEEAGMQRNGKTVLYDG 960 GVPSRMNIGQVLEVHLGMAAL+LGIHVA+PVFDGA EYDVFDTMEEAGMQRNGKTVLYDG Sbjct: 968 GVPSRMNIGQVLEVHLGMAALQLGIHVASPVFDGASEYDVFDTMEEAGMQRNGKTVLYDG 1027 Query: 961 RTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1020 RTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV Sbjct: 1028 RTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1087 Query: 1021 WALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENLPEPGVPEAFKVLIKELQSLGM 1080 WALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGEN+PEPGVPE+FKVLIKELQSLGM Sbjct: 1088 WALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLGM 1147 Query: 1081 DVKILSGDEQEIEMKELDDEDETSGDKLSLNLEGAEVGIE 1120 DVKILS +E+EIEMKELDDED+ GDKLSLNLEGAEVG+E Sbjct: 1148 DVKILSENEEEIEMKELDDEDDAQGDKLSLNLEGAEVGVE 1187 >B1DJY4.1 B1DJY4_9BACL DNA-directed RNA polymerase EC=2.7.7.6 Length = 1187 Score = 2089 bits (5412), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1016/1119 (90%), Positives = 1077/1119 (96%) Query: 2 LEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTETG 61 LEFIDYSLGEPKY+VD++KERDVTYAAPLRVKVRL NKETGEVKEQEVFMGDFPLMTETG Sbjct: 69 LEFIDYSLGEPKYSVDESKERDVTYAAPLRVKVRLFNKETGEVKEQEVFMGDFPLMTETG 128 Query: 62 TFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYVR 121 TFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYVR Sbjct: 129 TFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYVR 188 Query: 122 IDRTRKIPVTVLLRALGFGSDAEILELLGNDEYIRNTLDKDNTDSTEKALIEIYERLRPG 181 IDRTRKIPVTVLLRALGFG+DAEILELLG+DEYIRNTLDKDNTDSTEKALIEIYERLRPG Sbjct: 189 IDRTRKIPVTVLLRALGFGTDAEILELLGHDEYIRNTLDKDNTDSTEKALIEIYERLRPG 248 Query: 182 EPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQPLVDESTGEIL 241 EPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLA+ LVD TGEI+ Sbjct: 249 EPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPGTGEII 308 Query: 242 AESGQMVDRRLLDELIPYFEKDVAAKTYRVTGGVLDSEDIPLQTIDVFSPIEEGRVIKLI 301 AE+GQM+DRRLLDE++ EK+V KTY V GVLD++ IPLQ I V+SP+++ +VIK+I Sbjct: 309 AEAGQMIDRRLLDEILDKLEKNVGFKTYHVANGVLDADSIPLQAISVYSPLDDAKVIKVI 368 Query: 302 ANGNIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRIGL 361 +NG IDKSVKHIT ADIISSI+YFINLLHG+GNTDDIDHLGNRRLRSVGELLQNQFRIGL Sbjct: 369 SNGVIDKSVKHITPADIISSINYFINLLHGVGNTDDIDHLGNRRLRSVGELLQNQFRIGL 428 Query: 362 SRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKR 421 SRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKR Sbjct: 429 SRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKR 488 Query: 422 RLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGFIE 481 RLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGFIE Sbjct: 489 RLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGFIE 548 Query: 482 APYRWVDPKTGKVTEHIDYLTADEEDNYVVAQANVQIDEDGTFKEDMVIVRYNKDSDNIT 541 APYRWVDPKTG VTE I YLTADEEDNYVVAQAN ++ E+G F +D VIVRYNK +DNI Sbjct: 549 APYRWVDPKTGVVTEQISYLTADEEDNYVVAQANAKLTEEGNFVDDSVIVRYNKQADNIL 608 Query: 542 TMPSNRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGTG 601 TMPS RVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGTG Sbjct: 609 TMPSERVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGTG 668 Query: 602 MEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVEMVEGKEVKGDIVKYKLHKFMRSNQG 661 MEHKSAKDSGVCIVSKYDG+IER+SANEIWLRR E+++GK+V GD+VK+KLHKFMRSNQG Sbjct: 669 MEHKSAKDSGVCIVSKYDGVIERASANEIWLRRTEILDGKQVVGDLVKHKLHKFMRSNQG 728 Query: 662 TCINQRPLAKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSEKL 721 TCINQRPL ++GD++KKGDILADGPSTE GELALGRNVVVAFMTWEGYNYEDAILLSEKL Sbjct: 729 TCINQRPLVRKGDVIKKGDILADGPSTEQGELALGRNVVVAFMTWEGYNYEDAILLSEKL 788 Query: 722 VKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEINAGDI 781 VKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE+AL+NLDERGIIR+GAEI+AGDI Sbjct: 789 VKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRVGAEISAGDI 848 Query: 782 LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGDEL 841 LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHG+DGI+VDVKVFTRENGDEL Sbjct: 849 LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGDEL 908 Query: 842 PPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNPLG 901 PPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGV+ARI+PEEDMPFLPDGTPV+VVLNPLG Sbjct: 909 PPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIARIMPEEDMPFLPDGTPVEVVLNPLG 968 Query: 902 VPSRMNIGQVLEVHLGMAALRLGIHVATPVFDGAREYDVFDTMEEAGMQRNGKTVLYDGR 961 VPSRMNIGQVLEVHLGMA RLG+H ATPVFDGAREYDVFDTMEEAGMQRNGKT+LYDGR Sbjct: 969 VPSRMNIGQVLEVHLGMACKRLGLHAATPVFDGAREYDVFDTMEEAGMQRNGKTILYDGR 1028 Query: 962 TGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1021 TGE FEREVTVGVM+MIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW Sbjct: 1029 TGESFEREVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1088 Query: 1022 ALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENLPEPGVPEAFKVLIKELQSLGMD 1081 ALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGEN+PEPGVPE+FKVLIKELQSLGMD Sbjct: 1089 ALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLGMD 1148 Query: 1082 VKILSGDEQEIEMKELDDEDETSGDKLSLNLEGAEVGIE 1120 VKIL+ +E+EIEMKE+DDED+ + DKL+LNLEGAE G E Sbjct: 1149 VKILTENEEEIEMKEIDDEDDGTSDKLNLNLEGAEAGAE 1187 >C0ZIH0.1 RPOB_BREBN DNA-directed RNA polymerase subunit beta EC=2.7.7.6 Length = 1179 Score = 1895 bits (4908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 921/1120 (82%), Positives = 1031/1120 (92%), Gaps = 3/1120 (0%) Query: 1 VLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTET 60 VLEFIDYSLGEPKY VD++KERDVTYAAPLRVKVRL+NKETGEVKEQEVFMGDFPLMTET Sbjct: 63 VLEFIDYSLGEPKYDVDESKERDVTYAAPLRVKVRLLNKETGEVKEQEVFMGDFPLMTET 122 Query: 61 GTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYV 120 GTFIINGAERVIVSQLVRSPSVY++TKVDKNGK+T+TATVIPNRGAWLELETDAKD++YV Sbjct: 123 GTFIINGAERVIVSQLVRSPSVYYNTKVDKNGKQTFTATVIPNRGAWLELETDAKDVIYV 182 Query: 121 RIDRTRKIPVTVLLRALGFGSDAEILELLGNDEYIRNTLDKDNTDSTEKALIEIYERLRP 180 RIDRTRKIPVTVLLRALGFGSD EIL LLG DEYI+NTL+KDNTDSTEKALIEIYERLRP Sbjct: 183 RIDRTRKIPVTVLLRALGFGSDIEILNLLGEDEYIKNTLEKDNTDSTEKALIEIYERLRP 242 Query: 181 GEPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQPLVDESTGEI 240 GEPPT++NAKSLL++RFFDPKRYDLA+VGRYK+NKKLH+KNRL+NQRLA+ L+D +TGEI Sbjct: 243 GEPPTVENAKSLLISRFFDPKRYDLASVGRYKMNKKLHLKNRLYNQRLAETLIDTTTGEI 302 Query: 241 LAESGQMVDRRLLDELIPYFEKDVAAKTYRVTGGVLDSEDIPLQTIDVFSPIEEGRVIKL 300 AE+GQM+DRR+L+ ++P E + R GGVL+ E I LQ+I++FSPIE+G++IK+ Sbjct: 303 FAEAGQMIDRRVLERIVPALEGSIGFIDVRTHGGVLEDEAIHLQSINIFSPIEDGKIIKV 362 Query: 301 IANGNIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFRIG 360 I NGN+DKS KHIT ADI+S+I+YF+NLLH +G+TDDIDHLGNRRLRSVGELLQNQFRIG Sbjct: 363 IGNGNVDKSFKHITPADIVSAINYFMNLLHSVGSTDDIDHLGNRRLRSVGELLQNQFRIG 422 Query: 361 LSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHK 420 LSRMERVVRERMSIQD N ITPQALINIRPVIAS+KEFFGSSQLSQFMDQTNPLAELTHK Sbjct: 423 LSRMERVVRERMSIQDQNQITPQALINIRPVIASLKEFFGSSQLSQFMDQTNPLAELTHK 482 Query: 421 RRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYGFI 480 RRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLS+FARIN+YGFI Sbjct: 483 RRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSSFARINDYGFI 542 Query: 481 EAPYRWVDPKTGKVTEHIDYLTADEEDNYVVAQANVQIDEDGTFKEDMVIVRYNKDSDNI 540 E P R VDP+TG V I YLTADEED + VAQAN +DEDG F DMVI R + I Sbjct: 543 ETPRRKVDPETGFVLTDISYLTADEEDVFNVAQANQPLDEDGRFVNDMVICRRKGE---I 599 Query: 541 TTMPSNRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLVGT 600 ++P ++VD+MDVSPKQVVSVATALIPFLENDD+NRALMGSNMQRQAVPLLIP+AP VGT Sbjct: 600 LSVPRDKVDFMDVSPKQVVSVATALIPFLENDDANRALMGSNMQRQAVPLLIPQAPFVGT 659 Query: 601 GMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVEMVEGKEVKGDIVKYKLHKFMRSNQ 660 GMEHK+A+DSGV IV+K+ G +ER +A EIW+RR + ++G++V GD+ KYK+HKF+RSNQ Sbjct: 660 GMEHKAAQDSGVAIVAKHPGQVERVTAREIWIRRYQEIDGRKVAGDLDKYKMHKFIRSNQ 719 Query: 661 GTCINQRPLAKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSEK 720 GTCINQRP+ GD ++KGDI+ DGPSTE GELALGRNV+VAFMTWEGYNYEDAILLSEK Sbjct: 720 GTCINQRPIVSTGDWIEKGDIVGDGPSTEKGELALGRNVIVAFMTWEGYNYEDAILLSEK 779 Query: 721 LVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEINAGD 780 LVK+DVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE+AL+NLDERGIIR+GAEI GD Sbjct: 780 LVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRVGAEIQDGD 839 Query: 781 ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENGDE 840 ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHG GIIVDVKVFTRENGDE Sbjct: 840 ILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGSGIIVDVKVFTRENGDE 899 Query: 841 LPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLNPL 900 LPPGVNQLVRVYIAQKRKIS GDKMAGRHGNKGV+ARI+ EEDMPFLPDG+PV++VLNPL Sbjct: 900 LPPGVNQLVRVYIAQKRKISVGDKMAGRHGNKGVIARIMAEEDMPFLPDGSPVEIVLNPL 959 Query: 901 GVPSRMNIGQVLEVHLGMAALRLGIHVATPVFDGAREYDVFDTMEEAGMQRNGKTVLYDG 960 GVPSRMNIGQVLE HLGMAA LGIHVATPVFDGAR+ +VF+T+ EAG+ R+GKT+L+DG Sbjct: 960 GVPSRMNIGQVLETHLGMAAKLLGIHVATPVFDGARQAEVFETLAEAGLDRDGKTILFDG 1019 Query: 961 RTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1020 RTGE F+R VTVG ++M+KLAH+VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV Sbjct: 1020 RTGEPFDRRVTVGCVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1079 Query: 1021 WALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENLPEPGVPEAFKVLIKELQSLGM 1080 WALEAYGAAYTLQEILTVKSDDVVGRVKTYE+IVKGEN+PEPGVPE+FKVLIKELQSLGM Sbjct: 1080 WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGM 1139 Query: 1081 DVKILSGDEQEIEMKELDDEDETSGDKLSLNLEGAEVGIE 1120 DVKILSGDEQEIEM+E++DEDE +G+KL+L LEG + E Sbjct: 1140 DVKILSGDEQEIEMREMEDEDEGNGEKLNLVLEGGSLNEE 1179 >Q5WLS0.1 RPOB_BACSK DNA-directed RNA polymerase subunit beta EC=2.7.7.6 Length = 1180 Score = 1892 bits (4900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 905/1118 (80%), Positives = 1027/1118 (91%), Gaps = 5/1118 (0%) Query: 1 VLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTET 60 VLEFIDYSLGEPKY VD++KERDVT+AAPLRVKVRLINKETGEVKEQEVFMGDFPLMTET Sbjct: 63 VLEFIDYSLGEPKYPVDESKERDVTFAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTET 122 Query: 61 GTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYV 120 GTFIINGAERVIVSQLVRSPSVY+S K+DKNGKK +TATVIPNRGAWLELETDAKDI+YV Sbjct: 123 GTFIINGAERVIVSQLVRSPSVYYSQKLDKNGKKGFTATVIPNRGAWLELETDAKDIVYV 182 Query: 121 RIDRTRKIPVTVLLRALGFGSDAEILELLGNDEYIRNTLDKDNTDSTEKALIEIYERLRP 180 RIDRTRKIPVTVLLRALGFGSD EI++LLG +EY+RNTL+KDNTDST+KAL+EIYERLRP Sbjct: 183 RIDRTRKIPVTVLLRALGFGSDQEIVDLLGENEYLRNTLEKDNTDSTDKALLEIYERLRP 242 Query: 181 GEPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQPLVDESTGEI 240 GEPPT++NAKSLL +RFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLA+ LVD TGE+ Sbjct: 243 GEPPTVENAKSLLESRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAEKLVDPETGEV 302 Query: 241 LAESGQMVDRRLLDELIPYFEKDVAAKTYRVTGGVLDSEDIPLQTIDVF--SPIEEGRVI 298 LAE G ++DRR LD+LIP+ EK+V +T R +GGVL+ D+ +Q++ ++ E RVI Sbjct: 303 LAEEGTLLDRRTLDKLIPHLEKNVGFRTARTSGGVLEESDVEIQSVKIYVADDYEGERVI 362 Query: 299 KLIANGNIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFR 358 +I+NG +++ VKHI ADII+SISYF NLLHG+G+TDDIDHLGNRRLRSVGELLQNQFR Sbjct: 363 SVISNGMVERDVKHIAPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFR 422 Query: 359 IGLSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 418 IGLSRMERVVRERMSIQD N ITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT Sbjct: 423 IGLSRMERVVRERMSIQDPNVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 482 Query: 419 HKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYG 478 HKRRLSALGPGGLTRERAG EVRDVH+SHYGRMCPIETPEGPNIGLIN+LS++A++NE+G Sbjct: 483 HKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINTLSSYAKVNEFG 542 Query: 479 FIEAPYRWVDPKTGKVTEHIDYLTADEEDNYVVAQANVQIDEDGTFKEDMVIVRYNKDSD 538 F+E PYR VDP+TGKVT IDYLTADEEDNYVVAQAN ++++DG+F +D +I R+ ++ Sbjct: 543 FMETPYRRVDPETGKVTSRIDYLTADEEDNYVVAQANAKLNDDGSFVDDNIIARFRGEN- 601 Query: 539 NITTMPSNRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLV 598 T +P +RVDYMDVSPKQVVS AT+ IPFLENDDSNRALMG+NMQRQAVPLL+P+APLV Sbjct: 602 --TVVPCDRVDYMDVSPKQVVSAATSCIPFLENDDSNRALMGANMQRQAVPLLVPEAPLV 659 Query: 599 GTGMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVEMVEGKEVKGDIVKYKLHKFMRS 658 GTGMEH SAKDSG +VSKY GI+ER +A EIW+RR+E V+GKE KGD+ KYKL KF+RS Sbjct: 660 GTGMEHVSAKDSGAAVVSKYAGIVERVTAKEIWVRRIEEVDGKETKGDLDKYKLQKFVRS 719 Query: 659 NQGTCINQRPLAKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLS 718 NQGT NQRP+ + GD ++K +ILADGPS EMGE+ALGRNV+VAFMTW+GYNYEDAI+LS Sbjct: 720 NQGTSYNQRPIVREGDRIEKREILADGPSMEMGEMALGRNVLVAFMTWDGYNYEDAIILS 779 Query: 719 EKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEINA 778 E+LVK+DVYTSIHIEEYES+ARDTKLGPEEITRDIPNVGE+ALRNLDERGIIRIGAE+ Sbjct: 780 ERLVKDDVYTSIHIEEYESDARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKD 839 Query: 779 GDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENG 838 GDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLR PHG DGI++DVK+F RE+G Sbjct: 840 GDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIVLDVKIFNREDG 899 Query: 839 DELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLN 898 DELPPGVNQLVRVYI QKRKI++GDKMAGRHGNKGV++RILPEEDMPFLPDGTPV ++LN Sbjct: 900 DELPPGVNQLVRVYIVQKRKINQGDKMAGRHGNKGVISRILPEEDMPFLPDGTPVDIMLN 959 Query: 899 PLGVPSRMNIGQVLEVHLGMAALRLGIHVATPVFDGAREYDVFDTMEEAGMQRNGKTVLY 958 PLGVPSRMNIGQVLE+HLGMAA +LGIHVA+PVFDGA E DV+ T+EEAGM R+GKT+LY Sbjct: 960 PLGVPSRMNIGQVLELHLGMAARKLGIHVASPVFDGASEEDVWGTLEEAGMARDGKTILY 1019 Query: 959 DGRTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEM 1018 DGRTGE F+ V+VG+M+MIKLAHMVDDK+HARSTGPYSLVTQQPLGGKAQFGGQRFGEM Sbjct: 1020 DGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEM 1079 Query: 1019 EVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENLPEPGVPEAFKVLIKELQSL 1078 EVWALEAYGAAYTLQEILTVKSDDVVGRVKTYE+IVKGEN+PEPGVPE+FKVLIKELQSL Sbjct: 1080 EVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSL 1139 Query: 1079 GMDVKILSGDEQEIEMKELDDEDETSGDKLSLNLEGAE 1116 GMDVK+LS +E+EIEM+ELDDE++ + +KL+LNLE E Sbjct: 1140 GMDVKMLSSNEEEIEMRELDDEEDQTSEKLNLNLETNE 1177 >Q9Z9M2.1 RPOB_BACHD DNA-directed RNA polymerase subunit beta EC=2.7.7.6 Length = 1180 Score = 1887 bits (4888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 902/1121 (80%), Positives = 1027/1121 (91%), Gaps = 5/1121 (0%) Query: 1 VLEFIDYSLGEPKYTVDDAKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTET 60 VLEFIDYSLGEPKY VD++KERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMT+T Sbjct: 63 VLEFIDYSLGEPKYPVDESKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTDT 122 Query: 61 GTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIMYV 120 GTFIINGAERVIVSQLVRSPSVY+S K+DKNGKK YTATVIPNRGAWLELETDAKDI+YV Sbjct: 123 GTFIINGAERVIVSQLVRSPSVYYSEKIDKNGKKGYTATVIPNRGAWLELETDAKDIVYV 182 Query: 121 RIDRTRKIPVTVLLRALGFGSDAEILELLGNDEYIRNTLDKDNTDSTEKALIEIYERLRP 180 RIDRTRKIPVTVLLRALGFGSD EI++LLG DEY+RNTL+KDNTDS EKAL+EIYERLRP Sbjct: 183 RIDRTRKIPVTVLLRALGFGSDQEIIDLLGEDEYLRNTLEKDNTDSAEKALLEIYERLRP 242 Query: 181 GEPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAQPLVDESTGEI 240 GEPPT++NAKSLL +RFFDPKRYDLANVGRYK+NKKLHIKNRLFNQRLA+ L+D TGE+ Sbjct: 243 GEPPTVENAKSLLDSRFFDPKRYDLANVGRYKVNKKLHIKNRLFNQRLAETLIDPETGEV 302 Query: 241 LAESGQMVDRRLLDELIPYFEKDVAAKTYRVTGGVLDSEDIPLQTIDVFSPIEEG--RVI 298 +AE G ++DRR LD ++PY E +V +T R++GGV++ +++ LQ++ +++P ++ VI Sbjct: 303 IAEEGSIIDRRTLDRILPYLENNVGFRTVRMSGGVVEEDEVRLQSVKIYAPDDQDGEHVI 362 Query: 299 KLIANGNIDKSVKHITQADIISSISYFINLLHGIGNTDDIDHLGNRRLRSVGELLQNQFR 358 ++I NG ++K +KHIT ADII+SI+YF NLLH +G TDDIDHLGNRRLRSVGELLQNQFR Sbjct: 363 RVIGNGLVEKEIKHITPADIIASINYFFNLLHSVGGTDDIDHLGNRRLRSVGELLQNQFR 422 Query: 359 IGLSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 418 IGLSRMERVVRERMSIQD N+ITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT Sbjct: 423 IGLSRMERVVRERMSIQDPNSITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 482 Query: 419 HKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSTFARINEYG 478 HKRRLSALGPGGLTRERAGFEVRDVH+SHYGRMCPIETPEGPNIGLINSLST+A++NE+G Sbjct: 483 HKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNEFG 542 Query: 479 FIEAPYRWVDPKTGKVTEHIDYLTADEEDNYVVAQANVQIDEDGTFKEDMVIVRYNKDSD 538 F+E PYR VDP+TGKVT IDYLTADEEDNYVVAQAN+++ EDG+F ++ +I R+ + Sbjct: 543 FMETPYRRVDPETGKVTAQIDYLTADEEDNYVVAQANMKLAEDGSFIDENIIARFR--GE 600 Query: 539 NITTMPSNRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKAPLV 598 NI + +RVDYMDVSPKQVVS AT+ IPFLENDDSNRALMG+NMQRQAVPLL+P+AP+V Sbjct: 601 NIV-VSRDRVDYMDVSPKQVVSAATSCIPFLENDDSNRALMGANMQRQAVPLLVPEAPIV 659 Query: 599 GTGMEHKSAKDSGVCIVSKYDGIIERSSANEIWLRRVEMVEGKEVKGDIVKYKLHKFMRS 658 GTGMEH SAKDSG IVSK+ GI+ER +A EIW+RR+E V+GKE+KGD+ KY+L KF+RS Sbjct: 660 GTGMEHVSAKDSGAAIVSKHRGIVERVTAKEIWVRRLEEVDGKEIKGDLDKYRLQKFIRS 719 Query: 659 NQGTCINQRPLAKRGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLS 718 NQGT NQRP+ K GD+V+K +ILADGPS E GE+ALGRNV+V FMTWEGYNYEDAI+LS Sbjct: 720 NQGTSYNQRPIVKEGDVVEKREILADGPSMEKGEMALGRNVLVGFMTWEGYNYEDAIILS 779 Query: 719 EKLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEINA 778 E+LVK+DVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE+ALRNLDERGIIR+GAE+ Sbjct: 780 ERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKD 839 Query: 779 GDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGSDGIIVDVKVFTRENG 838 GDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLR PHG DGI++DVK+F RE+G Sbjct: 840 GDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIVLDVKIFNREDG 899 Query: 839 DELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVQVVLN 898 DELPPGVNQLVRVYI QKRKI EGDKMAGRHGNKGV++RILPEEDMP+LPDGTP+ ++LN Sbjct: 900 DELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLN 959 Query: 899 PLGVPSRMNIGQVLEVHLGMAALRLGIHVATPVFDGAREYDVFDTMEEAGMQRNGKTVLY 958 PLGVPSRMNIGQVLE+HLGMAA RLG+HVA+PVFDGA E DV+ T+EEAGM R+GKT+LY Sbjct: 960 PLGVPSRMNIGQVLELHLGMAARRLGLHVASPVFDGASEEDVWATLEEAGMARDGKTILY 1019 Query: 959 DGRTGERFEREVTVGVMHMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEM 1018 DGRTGE F+ V+VG+M+MIKLAHMVDDK+HARSTGPYSLVTQQPLGGKAQFGGQRFGEM Sbjct: 1020 DGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEM 1079 Query: 1019 EVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENLPEPGVPEAFKVLIKELQSL 1078 EVWALEAYGAAYTLQEILTVKSDDVVGRVKTYE+IVKGEN+PEPGVPE+FKVLIKELQSL Sbjct: 1080 EVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSL 1139 Query: 1079 GMDVKILSGDEQEIEMKELDDEDETSGDKLSLNLEGAEVGI 1119 GMDVK+LS E+EIEMKELDDEDE + DKL+LN++ E + Sbjct: 1140 GMDVKMLSSTEEEIEMKELDDEDEQASDKLNLNIDSTESNV 1180 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 6,828,151,573 Number of extensions: 307533332 Number of successful extensions: 810952 Number of sequences better than 1.0e-05: 10631 Number of HSP's gapped: 785552 Number of HSP's successfully gapped: 15934 Length of query: 1120 Length of database: 3,060,696,203 Length adjustment: 147 Effective length of query: 973 Effective length of database: 1,675,806,998 Effective search space: 1630560209054 Effective search space used: 1630560209054 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 137 (57.4 bits)