BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0076.p (1203 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJY3.1 B1DJY3_9BACL DNA-directed RNA polymerase EC=2.7.7.6 2155 0.0 C0ZIH1.1 C0ZIH1_BREBN DNA-directed RNA polymerase beta' chain EC... 1941 0.0 C1PXE1.1 C1PXE1_ALIAC DNA-directed RNA polymerase subunit beta' ... 1917 0.0 B7DS00.1 B7DS00_9BACL DNA-directed RNA polymerase EC=2.7.7.6 1913 0.0 C3P9P8.1 C3P9P8_BACAA DNA-directed RNA polymerase, beta' subunit... 1875 0.0 >B1DJY3.1 B1DJY3_9BACL DNA-directed RNA polymerase EC=2.7.7.6 Length = 1208 Score = 2155 bits (5583), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1034/1184 (87%), Positives = 1114/1184 (94%) Query: 1 LLDINSFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC 60 +LD+N+FE+MKIGLASP+KIRSWSRGEVKKPETINYRTLKPEKEGLFCE+IFGP KDWEC Sbjct: 1 MLDVNNFEYMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC 60 Query: 61 HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM 120 HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM Sbjct: 61 HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM 120 Query: 121 SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ 180 SPRSLEEIIYFASYVVTDPG+TPLEKKQLLSEKEYRSYREKYGYGFQA MGAEAVKKLLQ Sbjct: 121 SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQASMGAEAVKKLLQ 180 Query: 181 DIDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP 240 DID++KELE LKEELRTAQGQRRNRAIKRLEVIEAFRNSGN+P+WMI+DVLPVIPPELRP Sbjct: 181 DIDVEKELETLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNEPEWMILDVLPVIPPELRP 240 Query: 241 MVQLDGGRFATSDLNDLYXXXXXXXXXXXXXXDLGAPDIIVQNEKRMLQEAVDALIDNGR 300 MVQLDGGRFATSDLNDLY DLGAPDIIVQNEKRMLQEAVDALIDNGR Sbjct: 241 MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR 300 Query: 301 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK 360 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP LKM+QCGLPK+ Sbjct: 301 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMFQCGLPKE 360 Query: 361 MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEDVIKEHPVLLNRAPTLHR 420 MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLE+VIKEHPVLLNRAPTLHR Sbjct: 361 MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR 420 Query: 421 LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL 480 LGIQAFEPILVEG AI+LHPLVCTAYNADFDGDQMAVHVPLSAEAQAEAR+LMLASGNIL Sbjct: 421 LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL 480 Query: 481 NPKDGKPVVTPSQDMVLGTFYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP 540 NPKDGKPVVTPSQDMVLG++YLTMDNKE KG+G + TVNEA+SAYQRG LHARV +P Sbjct: 481 NPKDGKPVVTPSQDMVLGSYYLTMDNKEAKGSGSVFATVNEAISAYQRGIVSLHARVFVP 540 Query: 541 AKALGKTCFTEAQQNAMLVTTIGKIIFNEIYPSSFPYINEATKTNLLQGTPEKYFIYEKG 600 A+ L KT FTE QQN+++ TT+GK+IFNEI+P FPYINEATK NLLQGTP+KYF+YEKG Sbjct: 541 ARVLKKTIFTEQQQNSLISTTVGKVIFNEIFPEDFPYINEATKANLLQGTPDKYFVYEKG 600 Query: 601 ADIRELILSLPDASAVGKEYLGLIIARCFEIYHTTQTSMILDKIKQLGFTYSTRSGVTVA 660 +D+ +++ LP A VGKEYLG II CF IYHTT TS+ILD+IKQLGFTYSTR+G+TVA Sbjct: 601 SDLNKIMDELPIAGGVGKEYLGNIIGECFRIYHTTLTSIILDRIKQLGFTYSTRAGITVA 660 Query: 661 VSDVIVPEEKITILKESEAKVDVVANQYRRGLITNDERYDRVIEIWSKTKDDLTNILLKS 720 VSDVIVPEEK+ ILKES+AKV VV NQYRRGLITN+ERYDRVIEIWSK+KD +T IL++S Sbjct: 661 VSDVIVPEEKVEILKESDAKVAVVMNQYRRGLITNEERYDRVIEIWSKSKDQITEILMRS 720 Query: 721 MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS 780 MDR+NSIMLMVDSKARGNKSQI QLGGMRGLMA PSGRI ELPIK+NFREGLTVLEYFIS Sbjct: 721 MDRYNSIMLMVDSKARGNKSQIAQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS 780 Query: 781 THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL 840 THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGF VS+IQDGKEVIEDL Sbjct: 781 THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFAVSKIQDGKEVIEDL 840 Query: 841 YDRIEGRYSFETVRHPETKEIIVNRNDLIDSDKAEEIVNAGVTKLQIRSVLSCRARHGVC 900 YDRIEGRYSFET+RHP+T E+IV +++LIDS KA+ I+ AG+ KLQIRSVLSCRARHGVC Sbjct: 841 YDRIEGRYSFETLRHPKTGEVIVKKSELIDSGKADAIIEAGIEKLQIRSVLSCRARHGVC 900 Query: 901 KKCYGRNLATGKHVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL 960 K CYGRNLATGKHV+IGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL Sbjct: 901 KVCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL 960 Query: 961 FEARNPKGQATISEIDGVIKEIRETKDRREIEVQGEAESKTYSITYGSRLRVSEGQEIEA 1020 FEARNPKGQA I+E+DGV+KEIRE KDRREIEVQGEAE+K Y+ITYGSR+RV+EGQ++EA Sbjct: 961 FEARNPKGQAIITELDGVVKEIREAKDRREIEVQGEAETKVYAITYGSRIRVTEGQQLEA 1020 Query: 1021 GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI 1080 GDELTDGSIDPK+MLRIKGIRGVQNYILQEVQRVYRNQGVEINDKH+EVM+KQMLRKIRI Sbjct: 1021 GDELTDGSIDPKDMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMVKQMLRKIRI 1080 Query: 1081 IEAGDTNLLPGAFSDIHEYEAANKEAILTGKEPAVAKPVLLGITKASLETDSFLSAASFQ 1140 ++AGDT LLPGAF DIHEYEAAN+EAI G EPAVAKPVLLGITKASLETDSFLSAASFQ Sbjct: 1081 VDAGDTTLLPGAFVDIHEYEAANREAIFAGLEPAVAKPVLLGITKASLETDSFLSAASFQ 1140 Query: 1141 ETTRVLTDAAIKGKVDKLLGLKENVLIGKLIPAGTGMNRYRNVK 1184 ETTRVLTDAAIKGKVD+LLGLKENV+IGKLIPAGTGMNRYR++K Sbjct: 1141 ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSIK 1184 >C0ZIH1.1 C0ZIH1_BREBN DNA-directed RNA polymerase beta' chain EC=2.7.7.6 Length = 1208 Score = 1941 bits (5028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 917/1184 (77%), Positives = 1050/1184 (88%) Query: 1 LLDINSFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC 60 ++D+N+FE+MKIGLASP+KIRSWS GEVKKPETINYRTLKPEK+GLFCERIFGP KDWEC Sbjct: 1 MIDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC 60 Query: 61 HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM 120 HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGL LDM Sbjct: 61 HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM 120 Query: 121 SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ 180 SPRSLEE+IYFASYVVTDPG+TPL+KKQLLSEKEYR+YREKYG+ FQA MGAEA+K+LL Sbjct: 121 SPRSLEEVIYFASYVVTDPGDTPLDKKQLLSEKEYRNYREKYGHSFQAMMGAEAIKRLLA 180 Query: 181 DIDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP 240 +ID+DK++E LKE+L+TAQGQRRNRAIKRLEV+EAFRNSGN PDWM++DVLPVIPPELRP Sbjct: 181 EIDLDKDVETLKEDLKTAQGQRRNRAIKRLEVLEAFRNSGNHPDWMVLDVLPVIPPELRP 240 Query: 241 MVQLDGGRFATSDLNDLYXXXXXXXXXXXXXXDLGAPDIIVQNEKRMLQEAVDALIDNGR 300 MVQLDGGRFATSDLNDLY +LGAPDIIVQNEKRMLQEAVDALIDNGR Sbjct: 241 MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVQNEKRMLQEAVDALIDNGR 300 Query: 301 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK 360 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP LKMYQCGLPK+ Sbjct: 301 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE 360 Query: 361 MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEDVIKEHPVLLNRAPTLHR 420 MALELFKPFVMKELV+KGLAHNIKSAKRKVERV PEVWDVLEDVI+EHPVLLNRAPTLHR Sbjct: 361 MALELFKPFVMKELVSKGLAHNIKSAKRKVERVQPEVWDVLEDVIREHPVLLNRAPTLHR 420 Query: 421 LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL 480 LGIQAFEP+LVEG AIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLA+ NIL Sbjct: 421 LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL 480 Query: 481 NPKDGKPVVTPSQDMVLGTFYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP 540 NPKDGKPVVTPSQDMVLG++YLT++ + +KG G I R ++A++AYQ+G LH R+ +P Sbjct: 481 NPKDGKPVVTPSQDMVLGSYYLTLEREGDKGEGTIYRDPHDAIAAYQQGFISLHTRIVLP 540 Query: 541 AKALGKTCFTEAQQNAMLVTTIGKIIFNEIYPSSFPYINEATKTNLLQGTPEKYFIYEKG 600 AK L K FTE Q+NA++VTT+GK+IFNEI+P+ P+IN T+ NL P++ FI++KG Sbjct: 541 AKRLNKISFTERQENALIVTTVGKVIFNEIFPADMPFINAPTRANLQTMVPDECFIFDKG 600 Query: 601 ADIRELILSLPDASAVGKEYLGLIIARCFEIYHTTQTSMILDKIKQLGFTYSTRSGVTVA 660 ++ E I +LPD AV K +LG II+ CF + T +TSMILD+IK+LGFTYST++G+T+A Sbjct: 601 TNVSEFIKNLPDPGAVKKGFLGTIISECFRRFGTMKTSMILDRIKELGFTYSTKAGITIA 660 Query: 661 VSDVIVPEEKITILKESEAKVDVVANQYRRGLITNDERYDRVIEIWSKTKDDLTNILLKS 720 V+D+ VP +K IL ++ KV V Q+RRGLIT DERYDRVI IWSK KD++T +L+KS Sbjct: 661 VADIAVPGKKKDILDAADEKVATVMTQFRRGLITEDERYDRVISIWSKAKDEVTEVLMKS 720 Query: 721 MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS 780 MD+FN+I +M +S ARGN SQITQL GMRGLMA PSGRI ELPIK+NFREGLTVLEYFIS Sbjct: 721 MDKFNAIFMMANSGARGNVSQITQLAGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS 780 Query: 781 THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL 840 THGARKGLADTALRTADSGYLTRRLVDVAQDVIVRE DCGTDKG V+ I+DGKE IE L Sbjct: 781 THGARKGLADTALRTADSGYLTRRLVDVAQDVIVRETDCGTDKGIRVTAIKDGKEEIEKL 840 Query: 841 YDRIEGRYSFETVRHPETKEIIVNRNDLIDSDKAEEIVNAGVTKLQIRSVLSCRARHGVC 900 DR+ GR FET+RHPETKEIIV+RN+ I + AE I G+T + IR+VL+CR HGVC Sbjct: 841 SDRLTGRTCFETLRHPETKEIIVHRNEEISEEVAEYIEKVGITDVYIRNVLACRTSHGVC 900 Query: 901 KKCYGRNLATGKHVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL 960 K CYGRNLATG V++GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL Sbjct: 901 KLCYGRNLATGAEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL 960 Query: 961 FEARNPKGQATISEIDGVIKEIRETKDRREIEVQGEAESKTYSITYGSRLRVSEGQEIEA 1020 FEARNPKGQA ISEIDG + +IRE KDRREIEV+GEAE+K Y+ YGSR++VS G ++ A Sbjct: 961 FEARNPKGQAVISEIDGEVIDIREGKDRREIEVRGEAENKVYAAPYGSRIKVSVGVKLNA 1020 Query: 1021 GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI 1080 GDELT+GS+DPKEML+++G+RGV NYILQEVQ+VYR QGVEINDKH+EVMI+QMLRK+R+ Sbjct: 1021 GDELTEGSVDPKEMLKVRGMRGVSNYILQEVQKVYRMQGVEINDKHVEVMIRQMLRKLRV 1080 Query: 1081 IEAGDTNLLPGAFSDIHEYEAANKEAILTGKEPAVAKPVLLGITKASLETDSFLSAASFQ 1140 I++GDT+LLPG++ ++ E+E AN + ++ G+ PAV +PVLLGITKASLETDSFLSAASFQ Sbjct: 1081 IDSGDTDLLPGSYVEVPEFEQANAKVLMEGRNPAVGRPVLLGITKASLETDSFLSAASFQ 1140 Query: 1141 ETTRVLTDAAIKGKVDKLLGLKENVLIGKLIPAGTGMNRYRNVK 1184 ETTRVLTDAAIKGKVD+LLGLKENV+IGKL+PAGTGM+RYRNVK Sbjct: 1141 ETTRVLTDAAIKGKVDRLLGLKENVIIGKLVPAGTGMSRYRNVK 1184 >C1PXE1.1 C1PXE1_ALIAC DNA-directed RNA polymerase subunit beta' EC=2.7.7.6 Length = 1215 Score = 1917 bits (4966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 909/1184 (76%), Positives = 1043/1184 (88%) Query: 1 LLDINSFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC 60 L D+N+FEFMKIGLASPEKIRSWS GEVKKPETINYRTL+PEKEGLFCE+IFGP +DWEC Sbjct: 4 LFDLNNFEFMKIGLASPEKIRSWSHGEVKKPETINYRTLRPEKEGLFCEKIFGPTRDWEC 63 Query: 61 HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM 120 HCGKYKR+RYKGVVCDRCGVEVTR+KVRRERMGHIELAAPVSHIW+FKGIPSRMGL LDM Sbjct: 64 HCGKYKRIRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWFFKGIPSRMGLILDM 123 Query: 121 SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ 180 SPR+LEE+IYFASYVVTDPG+TPLEKKQLLSEKEYRSYREKYGY F+AGMGAEA++ LLQ Sbjct: 124 SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFKAGMGAEAIRTLLQ 183 Query: 181 DIDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP 240 +ID+D+E+E L+EELRTAQGQRRNRAIKRLEVIEAFR SGNKP WMI++ LPVIPP+LRP Sbjct: 184 EIDLDREVEILREELRTAQGQRRNRAIKRLEVIEAFRQSGNKPSWMILEALPVIPPDLRP 243 Query: 241 MVQLDGGRFATSDLNDLYXXXXXXXXXXXXXXDLGAPDIIVQNEKRMLQEAVDALIDNGR 300 MVQLDGGRFATSDLNDLY DLGAPDIIVQNEKRMLQEAVDALIDNGR Sbjct: 244 MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR 303 Query: 301 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK 360 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP L+MYQCGLPK+ Sbjct: 304 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRMYQCGLPKE 363 Query: 361 MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEDVIKEHPVLLNRAPTLHR 420 MALELFKPFVMKELV +GLAHNIKSAKRKVERVS EVWDV+EDVIK+HPVLLNRAPTLHR Sbjct: 364 MALELFKPFVMKELVARGLAHNIKSAKRKVERVSDEVWDVVEDVIKQHPVLLNRAPTLHR 423 Query: 421 LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL 480 LGIQAFEP+LVEG AI+LHPLVCTAYNADFDGDQMAVHVPLSAEAQAEAR+LMLA+ NIL Sbjct: 424 LGIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAHNIL 483 Query: 481 NPKDGKPVVTPSQDMVLGTFYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP 540 NPKDGKPVVTP+QDMVLG++YLT++ + G G + +V+E A + L R+A+P Sbjct: 484 NPKDGKPVVTPTQDMVLGSYYLTIEREGAPGEGKVFASVSEVEYALHQRLITLQTRIALP 543 Query: 541 AKALGKTCFTEAQQNAMLVTTIGKIIFNEIYPSSFPYINEATKTNLLQGTPEKYFIYEKG 600 AKA+GKT FTE Q NA+L+TT GK+IFN I+PS FPY+N A K+NLL G P+ FI+EKG Sbjct: 544 AKAVGKTSFTEKQANALLITTPGKLIFNSIFPSDFPYLNSAAKSNLLGGPPDDTFIFEKG 603 Query: 601 ADIRELILSLPDASAVGKEYLGLIIARCFEIYHTTQTSMILDKIKQLGFTYSTRSGVTVA 660 DIRE IL P AV K+ LG I+A CF Y TT T+ ILDK+K+LGF YST +G+T++ Sbjct: 604 VDIREAILKRPIPKAVIKKDLGNILAECFRRYGTTMTAEILDKVKRLGFHYSTLAGITIS 663 Query: 661 VSDVIVPEEKITILKESEAKVDVVANQYRRGLITNDERYDRVIEIWSKTKDDLTNILLKS 720 +SD++VPEEK I+ E+EAK + QYRRGLIT +E+Y +IWS+ K+ +++IL++S Sbjct: 664 ISDIVVPEEKKRIIAEAEAKEHKLKLQYRRGLITEEEQYVTFSQIWSEAKEQISSILMES 723 Query: 721 MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS 780 MD+FN I +M S ARG+ SQITQL GMRGLMA PSG I +L IK+NFREGL+VLEYFIS Sbjct: 724 MDQFNPIYMMATSGARGSNSQITQLAGMRGLMANPSGEIIQLAIKSNFREGLSVLEYFIS 783 Query: 781 THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL 840 THGARKGLADTALRTADSGYLTRRLVDVAQD IVRE DCGTDKG V I+DG EVIEDL Sbjct: 784 THGARKGLADTALRTADSGYLTRRLVDVAQDTIVREHDCGTDKGLRVMEIRDGSEVIEDL 843 Query: 841 YDRIEGRYSFETVRHPETKEIIVNRNDLIDSDKAEEIVNAGVTKLQIRSVLSCRARHGVC 900 DR+EGR +F+ V HPET E IV +N++ID + A++IV AG+ ++ IRSVL+CR RHGVC Sbjct: 844 RDRLEGRVAFQDVYHPETGEKIVGKNEMIDEEAADKIVAAGIKEVTIRSVLTCRTRHGVC 903 Query: 901 KKCYGRNLATGKHVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL 960 + CYGRNLATG V++GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPR+QEL Sbjct: 904 QLCYGRNLATGDMVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEL 963 Query: 961 FEARNPKGQATISEIDGVIKEIRETKDRREIEVQGEAESKTYSITYGSRLRVSEGQEIEA 1020 FEARNPKGQA I+E DGVI +IRE KD+REIE+ GE+E+KTY I YGSR+RVS GQ++EA Sbjct: 964 FEARNPKGQAVIAEFDGVITDIREGKDKREIELTGESETKTYQIPYGSRIRVSVGQQLEA 1023 Query: 1021 GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI 1080 G+ELT+GS+DPKEMLR+KG++GVQNY+L+EVQRVYR QGV+INDKHIEVMI+QMLRK+RI Sbjct: 1024 GEELTEGSVDPKEMLRVKGLQGVQNYLLREVQRVYRLQGVDINDKHIEVMIRQMLRKVRI 1083 Query: 1081 IEAGDTNLLPGAFSDIHEYEAANKEAILTGKEPAVAKPVLLGITKASLETDSFLSAASFQ 1140 ++AGDT+LLPG + D+ EYEAAN+EA+L+GKEPAVA+P LLGITKASLETDSFLSAASFQ Sbjct: 1084 LDAGDTDLLPGTYVDLFEYEAANREALLSGKEPAVARPALLGITKASLETDSFLSAASFQ 1143 Query: 1141 ETTRVLTDAAIKGKVDKLLGLKENVLIGKLIPAGTGMNRYRNVK 1184 ETTRVLT+AAIKGKVD+LLGLKENV+IGKLIPAGTGM RYRNV+ Sbjct: 1144 ETTRVLTEAAIKGKVDRLLGLKENVIIGKLIPAGTGMVRYRNVE 1187 >B7DS00.1 B7DS00_9BACL DNA-directed RNA polymerase EC=2.7.7.6 Length = 1212 Score = 1913 bits (4956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 907/1184 (76%), Positives = 1043/1184 (88%) Query: 1 LLDINSFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC 60 + D+N+FEFMKIGLASPEKIRSWS GEVKKPETINYRTL+PEKEGLFCE+IFGP +DWEC Sbjct: 1 MFDLNNFEFMKIGLASPEKIRSWSHGEVKKPETINYRTLRPEKEGLFCEKIFGPTRDWEC 60 Query: 61 HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM 120 HCGKYKR+RYKGVVCDRCGVEVTR+KVRRERMGHIELAAPVSHIW+FKGIPSRMGL LDM Sbjct: 61 HCGKYKRIRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWFFKGIPSRMGLILDM 120 Query: 121 SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ 180 SPR+LEE+IYFASYVVTDPG+TPLEKKQLLSEKEYRSYREKYGY F+AGMGAEA++ LLQ Sbjct: 121 SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFKAGMGAEAIRTLLQ 180 Query: 181 DIDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP 240 +ID+D+E+E L+EELRTAQGQRRNRAIKRLEVIEAFR SGNKP WMI++ LPVIPP+LRP Sbjct: 181 EIDLDREVEILREELRTAQGQRRNRAIKRLEVIEAFRQSGNKPSWMILEALPVIPPDLRP 240 Query: 241 MVQLDGGRFATSDLNDLYXXXXXXXXXXXXXXDLGAPDIIVQNEKRMLQEAVDALIDNGR 300 MVQLDGGRFATSDLNDLY DLGAPDIIVQNEKRMLQEAVDALIDNGR Sbjct: 241 MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR 300 Query: 301 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK 360 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP L+MYQCGLPK+ Sbjct: 301 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRMYQCGLPKE 360 Query: 361 MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEDVIKEHPVLLNRAPTLHR 420 MALELFKPFVMKELV +GLAHNIKSAKRKVERVS EVWDV+EDVIK+HPVLLNRAPTLHR Sbjct: 361 MALELFKPFVMKELVARGLAHNIKSAKRKVERVSDEVWDVVEDVIKQHPVLLNRAPTLHR 420 Query: 421 LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL 480 LGIQAFEP+LVEG AI+LHPLVCTAYNADFDGDQMAVHVPLSAEAQAEAR+LMLA+ NIL Sbjct: 421 LGIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAHNIL 480 Query: 481 NPKDGKPVVTPSQDMVLGTFYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP 540 NPKDGKPVVTP+QDMVLG++YLT++ + G G + +V+E A + L R+A+P Sbjct: 481 NPKDGKPVVTPTQDMVLGSYYLTIEREGAPGEGKVFASVSEVEYALHQRLITLQTRIALP 540 Query: 541 AKALGKTCFTEAQQNAMLVTTIGKIIFNEIYPSSFPYINEATKTNLLQGTPEKYFIYEKG 600 AKA+GKT FTE Q NA+L+TT GK+IFN I+P+ FPY+N A K+NLL G P+ FI+EKG Sbjct: 541 AKAVGKTSFTEKQANALLITTPGKLIFNSIFPADFPYLNSAAKSNLLGGPPDDTFIFEKG 600 Query: 601 ADIRELILSLPDASAVGKEYLGLIIARCFEIYHTTQTSMILDKIKQLGFTYSTRSGVTVA 660 DIRE IL P AV K+ LG I+A CF Y TT T+ ILDK+K+LGF YST +G+T++ Sbjct: 601 VDIREAILKRPIPKAVIKKDLGNILAECFRRYGTTMTAEILDKVKRLGFHYSTLAGITIS 660 Query: 661 VSDVIVPEEKITILKESEAKVDVVANQYRRGLITNDERYDRVIEIWSKTKDDLTNILLKS 720 +SD++VPEEK I+ E+EAK + QYRRGLIT +E+Y +IWS+ K+ +++IL++S Sbjct: 661 ISDIVVPEEKKRIIAEAEAKEHKLKLQYRRGLITEEEQYVTFSQIWSEAKEQISSILMES 720 Query: 721 MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS 780 MD+FN I +M S ARG+ SQITQL GMRGLMA PSG I +L IK+NFREGL+VLEYFIS Sbjct: 721 MDQFNPIYMMATSGARGSNSQITQLAGMRGLMANPSGEIIQLAIKSNFREGLSVLEYFIS 780 Query: 781 THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL 840 THGARKGLADTALRTADSGYLTRRLVDVAQD IVRE DCGTDKG V I+DG EVIEDL Sbjct: 781 THGARKGLADTALRTADSGYLTRRLVDVAQDTIVREHDCGTDKGLRVMEIRDGSEVIEDL 840 Query: 841 YDRIEGRYSFETVRHPETKEIIVNRNDLIDSDKAEEIVNAGVTKLQIRSVLSCRARHGVC 900 DR+EGR +F+ V HPET E IV +N++ID + A++IV AG+ ++ IRSVL+CR RHGVC Sbjct: 841 RDRLEGRVAFQDVYHPETGEKIVGKNEMIDEEAADKIVAAGIKEVIIRSVLTCRTRHGVC 900 Query: 901 KKCYGRNLATGKHVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL 960 + CYGRNLATG V++GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPR+QEL Sbjct: 901 QLCYGRNLATGDMVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEL 960 Query: 961 FEARNPKGQATISEIDGVIKEIRETKDRREIEVQGEAESKTYSITYGSRLRVSEGQEIEA 1020 FEARNPKGQA I+E DGVI +IRE KD+REIE+ GE+E+KTY I YGSR+RVS GQ++EA Sbjct: 961 FEARNPKGQAVIAEFDGVITDIREGKDKREIELTGESETKTYQIPYGSRIRVSVGQQLEA 1020 Query: 1021 GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI 1080 G+ELT+GS+DPKEMLR+KG++GVQNY+L+EVQRVYR QGV+INDKHIEVMI+QMLRK+RI Sbjct: 1021 GEELTEGSVDPKEMLRVKGLQGVQNYLLREVQRVYRLQGVDINDKHIEVMIRQMLRKVRI 1080 Query: 1081 IEAGDTNLLPGAFSDIHEYEAANKEAILTGKEPAVAKPVLLGITKASLETDSFLSAASFQ 1140 ++AGDT+LLPG + D+ EYEAAN+EA+L+GKEPAVA+P LLGITKASLETDSFLSAASFQ Sbjct: 1081 LDAGDTDLLPGTYVDLFEYEAANREALLSGKEPAVARPALLGITKASLETDSFLSAASFQ 1140 Query: 1141 ETTRVLTDAAIKGKVDKLLGLKENVLIGKLIPAGTGMNRYRNVK 1184 ETTRVLT+AAIKGKVD+LLGLKENV+IGKLIPAGTGM RYRNV+ Sbjct: 1141 ETTRVLTEAAIKGKVDRLLGLKENVIIGKLIPAGTGMVRYRNVE 1184 >C3P9P8.1 C3P9P8_BACAA DNA-directed RNA polymerase, beta' subunit EC=2.7.7.6 Length = 1203 Score = 1875 bits (4857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 891/1183 (75%), Positives = 1018/1183 (86%), Gaps = 1/1183 (0%) Query: 1 LLDINSFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC 60 ++D+N+FE+MKIGLASP+KIRSWS GEVKKPETINYRTLKPEK+GLFCERIFGPQKDWEC Sbjct: 1 MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC 60 Query: 61 HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM 120 HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGL LDM Sbjct: 61 HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM 120 Query: 121 SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ 180 SPR+LEE+IYFASYVVT+ G+TPL+KKQLLSEKEYR+YR++YG FQA MGAEA+KKLLQ Sbjct: 121 SPRALEEVIYFASYVVTESGDTPLDKKQLLSEKEYRAYRDRYGSTFQAAMGAEAIKKLLQ 180 Query: 181 DIDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP 240 DID+DKE++FLKEEL+TAQGQRR RAIKRLEV+EAFRNSGN+P WMI+DVLPVIPPELRP Sbjct: 181 DIDLDKEVDFLKEELKTAQGQRRTRAIKRLEVLEAFRNSGNEPSWMILDVLPVIPPELRP 240 Query: 241 MVQLDGGRFATSDLNDLYXXXXXXXXXXXXXXDLGAPDIIVQNEKRMLQEAVDALIDNGR 300 MVQLDGGRFATSDLNDLY DLGAP IIVQNEKRMLQEAVDALIDNGR Sbjct: 241 MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR 300 Query: 301 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK 360 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP LKMYQCGLPK+ Sbjct: 301 RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE 360 Query: 361 MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEDVIKEHPVLLNRAPTLHR 420 MALELFKPFVMKELV KGLAHNIKSAKRK+ERV PEVWDVLE VIKEHPVLLNRAPTLHR Sbjct: 361 MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHR 420 Query: 421 LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL 480 LGIQAFEP LVEG AIRLHPLVCTAYNADFDGDQMAVHVPLS+EAQAEAR+LMLA+ NIL Sbjct: 421 LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL 480 Query: 481 NPKDGKPVVTPSQDMVLGTFYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP 540 NPKDGKPVVTPSQDMVLG +YLT++ + G GM+ + NEA+ AYQ G LH RVA+ Sbjct: 481 NPKDGKPVVTPSQDMVLGNYYLTLEREGAIGEGMVFKDANEALLAYQNGYVHLHTRVAVA 540 Query: 541 AKALGKTCFTEAQQNAMLVTTIGKIIFNEIYPSSFPYINEATKTNLLQGTPEKYFIYEKG 600 A A+ FTE Q+N +L+TT+GK+IFNEI P SFPYINE T +NL + TP KYF+ EKG Sbjct: 541 ASAVNNVTFTEEQKNMLLLTTVGKLIFNEILPESFPYINEPTNSNLEKETPAKYFV-EKG 599 Query: 601 ADIRELILSLPDASAVGKEYLGLIIARCFEIYHTTQTSMILDKIKQLGFTYSTRSGVTVA 660 A+I+E+I S + + K+ LG IIA F+ + T+TS +LD++K LGF YST++G+TV Sbjct: 600 ANIKEIIASREEVAPFSKKILGNIIAEVFKRFKITETSRMLDRMKNLGFKYSTKAGITVG 659 Query: 661 VSDVIVPEEKITILKESEAKVDVVANQYRRGLITNDERYDRVIEIWSKTKDDLTNILLKS 720 VSD++V EK IL E++AKVD V Q+RRGLIT +ERYDRVI IWS KD + L+KS Sbjct: 660 VSDILVLGEKDEILHEAQAKVDNVIKQFRRGLITEEERYDRVISIWSNAKDVIQGKLMKS 719 Query: 721 MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS 780 +++ N I +M DS ARGN S TQL GMRGLMA PSGRI ELPIK++FREGLTVLEYFIS Sbjct: 720 LNKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIELPIKSSFREGLTVLEYFIS 779 Query: 781 THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL 840 THGARKGLADTAL+TADSGYLTRRLVDVAQDVIVREDDCGTD+G + I++G EVIE L Sbjct: 780 THGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLLIGAIKEGNEVIESL 839 Query: 841 YDRIEGRYSFETVRHPETKEIIVNRNDLIDSDKAEEIVNAGVTKLQIRSVLSCRARHGVC 900 YDR+ GR++ +TV+HPET E++V N LI D A + N+GV + IRS +C RHGVC Sbjct: 840 YDRLVGRFARKTVKHPETGEVLVAENQLITEDIAHIVENSGVETVNIRSAFTCNTRHGVC 899 Query: 901 KKCYGRNLATGKHVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL 960 KKCYGRNLATG V++GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQE+ Sbjct: 900 KKCYGRNLATGTDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEI 959 Query: 961 FEARNPKGQATISEIDGVIKEIRETKDRREIEVQGEAESKTYSITYGSRLRVSEGQEIEA 1020 FEARNPKGQA ISEIDGVI I + KDR+E+ VQGE E++TY+I YG+RL+V GQ+I Sbjct: 960 FEARNPKGQAVISEIDGVIAAINDVKDRQEVVVQGEVEARTYAIPYGARLKVIPGQKISH 1019 Query: 1021 GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI 1080 G ELT+GSIDPKE+L++ I VQ Y+L+EVQ+VYR QGVEI DKH+EVM++QMLRK+R+ Sbjct: 1020 GKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV 1079 Query: 1081 IEAGDTNLLPGAFSDIHEYEAANKEAILTGKEPAVAKPVLLGITKASLETDSFLSAASFQ 1140 +AG+T++LPG DIH++ AN + +L GK+PA A+PVLLGITKASLETDSFLSAASFQ Sbjct: 1080 SDAGETDVLPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKASLETDSFLSAASFQ 1139 Query: 1141 ETTRVLTDAAIKGKVDKLLGLKENVLIGKLIPAGTGMNRYRNV 1183 ETTRVLTDAAIKGK D+LLGLKENV+IGKL+PAGTGMNRYR V Sbjct: 1140 ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMNRYRKV 1182 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 6,887,173,849 Number of extensions: 294800686 Number of successful extensions: 796155 Number of sequences better than 1.0e-05: 6401 Number of HSP's gapped: 783398 Number of HSP's successfully gapped: 9739 Length of query: 1203 Length of database: 3,060,696,203 Length adjustment: 147 Effective length of query: 1056 Effective length of database: 1,675,806,998 Effective search space: 1769652189888 Effective search space used: 1769652189888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 137 (57.4 bits)