BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0075.p
         (83 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKH5.1 B3KKH5_9BACI Ribosomal protein L7Ae/L30e/S12e/Gadd45         117   3e-25
C0ZIH2.1 C0ZIH2_BREBN Putative ribosomal protein L7Ae family           85   3e-15
B1DJY2.1 B1DJY2_9BACL Ribosomal protein L7ae family protein            82   1e-14
P46350.3 RXL7_BACSU Ribosome-associated protein L7Ae-like              78   3e-13
B8I5N4.1 B8I5N4_CLOCE Ribosomal protein L7Ae/L30e/S12e/Gadd45          76   8e-13

>B3KKH5.1 B3KKH5_9BACI Ribosomal protein L7Ae/L30e/S12e/Gadd45
          Length = 83

 Score =  117 bits (294), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 67/83 (80%)

Query: 1  MTDDMGLQDAQVKIGTKQTVKAVELGQAAEVYVAEDGDQRLTSRIVMLCNKQGVKITYVD 60
          M++D GLQDA +KIGTKQT+KAVE G A EVYVAED DQRL S++V  C+K GV I YV 
Sbjct: 1  MSNDKGLQDAHIKIGTKQTMKAVESGLATEVYVAEDCDQRLISKVVSECDKNGVHINYVP 60

Query: 61 TMLNLGKACGIEVGAAMAAVLKQ 83
          TM+ LG+ACGIEVGAAM AVLK 
Sbjct: 61 TMIELGEACGIEVGAAMVAVLKS 83


>C0ZIH2.1 C0ZIH2_BREBN Putative ribosomal protein L7Ae family
          Length = 84

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 52/69 (75%)

Query: 14 IGTKQTVKAVELGQAAEVYVAEDGDQRLTSRIVMLCNKQGVKITYVDTMLNLGKACGIEV 73
          IG KQT+KAVE  Q   VY+A D D+RLT ++ +LC ++GV + +VD+M  LGKACGIEV
Sbjct: 14 IGIKQTIKAVESQQVEAVYIAVDADKRLTQKVELLCKEKGVPVIHVDSMYRLGKACGIEV 73

Query: 74 GAAMAAVLK 82
          GAA AA+ K
Sbjct: 74 GAATAAIKK 82


>B1DJY2.1 B1DJY2_9BACL Ribosomal protein L7ae family protein
          Length = 76

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 50/71 (70%)

Query: 11 QVKIGTKQTVKAVELGQAAEVYVAEDGDQRLTSRIVMLCNKQGVKITYVDTMLNLGKACG 70
          Q K+G KQT K +E  +A EVYVA D D R+  +IV LC +  V + ++DTM  LG+ CG
Sbjct: 2  QFKVGAKQTTKMLEQSKAIEVYVARDADPRMREKIVHLCERLSVPVKWIDTMQELGETCG 61

Query: 71 IEVGAAMAAVL 81
          I+VGAAMAA++
Sbjct: 62 IDVGAAMAALI 72


>P46350.3 RXL7_BACSU Ribosome-associated protein L7Ae-like
          Length = 82

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 54/81 (66%)

Query: 1  MTDDMGLQDAQVKIGTKQTVKAVELGQAAEVYVAEDGDQRLTSRIVMLCNKQGVKITYVD 60
          M+ D   Q   + IGTKQTVKA++ G   EV VA+D D  LTS +V L   QG+ ++ V+
Sbjct: 1  MSYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVE 60

Query: 61 TMLNLGKACGIEVGAAMAAVL 81
          +M  LGKACGIEVGAA  A++
Sbjct: 61 SMKKLGKACGIEVGAAAVAII 81


>B8I5N4.1 B8I5N4_CLOCE Ribosomal protein L7Ae/L30e/S12e/Gadd45
          Length = 80

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 1  MTDDMGLQDAQVKIGTKQTVKAVELGQAAEVYVAEDGDQRLTSRIVMLCNKQGVKITYVD 60
          M DD  L+  +  +G KQ+ KAVE G A+ V +A D +QR+   I+ LC  + V ITYVD
Sbjct: 1  MLDD--LKHCKKAVGVKQSTKAVENGVASSVIIARDCEQRVVRGIIELCENKSVPITYVD 58

Query: 61 TMLNLGKACGIEVGAAMAAVLK 82
          +M  LGKACGI+V AA+A + K
Sbjct: 59 SMKQLGKACGIDVDAAVACIFK 80


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.131    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 375,085,129
Number of extensions: 10459929
Number of successful extensions: 31735
Number of sequences better than 1.0e-05: 187
Number of HSP's gapped: 31747
Number of HSP's successfully gapped: 187
Length of query: 83
Length of database: 3,060,696,203
Length adjustment: 53
Effective length of query: 30
Effective length of database: 2,561,382,408
Effective search space: 76841472240
Effective search space used: 76841472240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)