BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0074.p
         (64 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKH4.1 B3KKH4_9BACI 30S ribosomal protein S12                       121   2e-26
B1RTQ9.1 B1RTQ9_CLOPE 30S ribosomal protein S12                       120   5e-26
B1RBZ0.1 B1RBZ0_CLOPE 30S ribosomal protein S12                       120   5e-26
B1BY82.1 B1BY82_CLOPE 30S ribosomal protein S12                       120   5e-26
B1BJT4.1 B1BJT4_CLOPE 30S ribosomal protein S12                       120   5e-26

>B3KKH4.1 B3KKH4_9BACI 30S ribosomal protein S12
          Length = 139

 Score =  121 bits (304), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/63 (92%), Positives = 60/63 (95%)

Query: 1   VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60
           VTAYIPGIGHNLQEHSVVL+RGG+VKDL GVRYHIVRGALDTAGV NRMQARSKYG KRP
Sbjct: 76  VTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTAGVNNRMQARSKYGTKRP 135

Query: 61  KAK 63
           KAK
Sbjct: 136 KAK 138


>B1RTQ9.1 B1RTQ9_CLOPE 30S ribosomal protein S12
          Length = 126

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 61/64 (95%)

Query: 1   VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60
           VTAYIPG+GHNLQEHSVVL+RGG+VKDL GVRYHIVRGALD+AGVANRMQ RSKYGAK+P
Sbjct: 63  VTAYIPGVGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDSAGVANRMQGRSKYGAKKP 122

Query: 61  KAKK 64
           K KK
Sbjct: 123 KQKK 126


>B1RBZ0.1 B1RBZ0_CLOPE 30S ribosomal protein S12
          Length = 126

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 61/64 (95%)

Query: 1   VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60
           VTAYIPG+GHNLQEHSVVL+RGG+VKDL GVRYHIVRGALD+AGVANRMQ RSKYGAK+P
Sbjct: 63  VTAYIPGVGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDSAGVANRMQGRSKYGAKKP 122

Query: 61  KAKK 64
           K KK
Sbjct: 123 KQKK 126


>B1BY82.1 B1BY82_CLOPE 30S ribosomal protein S12
          Length = 126

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 61/64 (95%)

Query: 1   VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60
           VTAYIPG+GHNLQEHSVVL+RGG+VKDL GVRYHIVRGALD+AGVANRMQ RSKYGAK+P
Sbjct: 63  VTAYIPGVGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDSAGVANRMQGRSKYGAKKP 122

Query: 61  KAKK 64
           K KK
Sbjct: 123 KQKK 126


>B1BJT4.1 B1BJT4_CLOPE 30S ribosomal protein S12
          Length = 126

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 61/64 (95%)

Query: 1   VTAYIPGIGHNLQEHSVVLLRGGKVKDLAGVRYHIVRGALDTAGVANRMQARSKYGAKRP 60
           VTAYIPG+GHNLQEHSVVL+RGG+VKDL GVRYHIVRGALD+AGVANRMQ RSKYGAK+P
Sbjct: 63  VTAYIPGVGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDSAGVANRMQGRSKYGAKKP 122

Query: 61  KAKK 64
           K KK
Sbjct: 123 KQKK 126


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 354,380,684
Number of extensions: 10440285
Number of successful extensions: 24553
Number of sequences better than 1.0e-05: 2171
Number of HSP's gapped: 24548
Number of HSP's successfully gapped: 2171
Length of query: 64
Length of database: 3,060,696,203
Length adjustment: 36
Effective length of query: 28
Effective length of database: 2,721,539,663
Effective search space: 76203110564
Effective search space used: 76203110564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)