BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0072.p
         (140 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKH3.1 B3KKH3_9BACI 30S ribosomal protein S7                        273   4e-72
B1DJY0.1 B1DJY0_9BACL 30S ribosomal protein S7                        267   2e-70
C0ZIH4.1 RS7_BREBN 30S ribosomal protein S7                           257   2e-67
Q9Z9L8.1 RS7_BACHD 30S ribosomal protein S7                           255   1e-66
Q5WLR6.1 RS7_BACSK 30S ribosomal protein S7                           249   6e-65

>B3KKH3.1 B3KKH3_9BACI 30S ribosomal protein S7
          Length = 156

 Score =  273 bits (698), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 132/140 (94%), Positives = 137/140 (97%)

Query: 1   LYNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVK 60
           +YNSKLVTRLINRIML GKRGVAQSILYNSF +I+ERTG +PMEVFEAAIKNIMPVLEVK
Sbjct: 17  VYNSKLVTRLINRIMLDGKRGVAQSILYNSFNIIKERTGNDPMEVFEAAIKNIMPVLEVK 76

Query: 61  ARRVGGANYQVPIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK 120
           ARRVGGANYQVPIEVKPERRT+LGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK
Sbjct: 77  ARRVGGANYQVPIEVKPERRTSLGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK 136

Query: 121 KREDTHKMAEANKAFAHYRW 140
           KREDTHKMAEANKAFAHYRW
Sbjct: 137 KREDTHKMAEANKAFAHYRW 156


>B1DJY0.1 B1DJY0_9BACL 30S ribosomal protein S7
          Length = 156

 Score =  267 bits (682), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/140 (90%), Positives = 137/140 (97%)

Query: 1   LYNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVK 60
           +YNSKLVTRLINRIM+ GKRGVAQ++LY++F LIQERTGK+PMEVFE A+KNIMPVLEVK
Sbjct: 17  VYNSKLVTRLINRIMIDGKRGVAQTLLYDAFTLIQERTGKDPMEVFEEALKNIMPVLEVK 76

Query: 61  ARRVGGANYQVPIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK 120
           ARRVGG+NYQVPIEVKPERRT+LGLRWLVNYSRNRGEKTMEERLAAEI+DASNNTGASVK
Sbjct: 77  ARRVGGSNYQVPIEVKPERRTSLGLRWLVNYSRNRGEKTMEERLAAEIMDASNNTGASVK 136

Query: 121 KREDTHKMAEANKAFAHYRW 140
           KREDTHKMAEANKAFAHYRW
Sbjct: 137 KREDTHKMAEANKAFAHYRW 156


>C0ZIH4.1 RS7_BREBN 30S ribosomal protein S7
          Length = 156

 Score =  257 bits (656), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/140 (85%), Positives = 134/140 (95%)

Query: 1   LYNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVK 60
           ++NSKLVTRLINR+ML GKRGVAQ+ILYN+F +IQERTG+ PMEVFE A+KN+MPVLEVK
Sbjct: 17  IHNSKLVTRLINRLMLDGKRGVAQNILYNAFDIIQERTGRNPMEVFEEALKNVMPVLEVK 76

Query: 61  ARRVGGANYQVPIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK 120
           ARRVGGANYQVPIEVKPERRT LGLRW+VNYSRNRGEKTME+RLA EI+DA+NNTGA+VK
Sbjct: 77  ARRVGGANYQVPIEVKPERRTTLGLRWMVNYSRNRGEKTMEQRLANEIMDAANNTGAAVK 136

Query: 121 KREDTHKMAEANKAFAHYRW 140
           KREDTHKMAEANKAFAHYRW
Sbjct: 137 KREDTHKMAEANKAFAHYRW 156


>Q9Z9L8.1 RS7_BACHD 30S ribosomal protein S7
          Length = 156

 Score =  255 bits (651), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/140 (85%), Positives = 134/140 (95%)

Query: 1   LYNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVK 60
           +YNSKLVTRLINRIM+ GKRG+AQ ILYN+F+L++ER+GK+PMEVF+ A+KNIMPVLEVK
Sbjct: 17  IYNSKLVTRLINRIMVDGKRGIAQKILYNAFELVRERSGKDPMEVFDQALKNIMPVLEVK 76

Query: 61  ARRVGGANYQVPIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK 120
           ARRVGGANYQVP+EVKPERRT LGLRWLVNYSR RGEKTMEERLA EI+DA+NNTGA+VK
Sbjct: 77  ARRVGGANYQVPVEVKPERRTTLGLRWLVNYSRLRGEKTMEERLANEILDAANNTGAAVK 136

Query: 121 KREDTHKMAEANKAFAHYRW 140
           KREDTHKMAEANKAFAHYRW
Sbjct: 137 KREDTHKMAEANKAFAHYRW 156


>Q5WLR6.1 RS7_BACSK 30S ribosomal protein S7
          Length = 156

 Score =  249 bits (636), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 116/140 (82%), Positives = 132/140 (94%)

Query: 1   LYNSKLVTRLINRIMLGGKRGVAQSILYNSFKLIQERTGKEPMEVFEAAIKNIMPVLEVK 60
           +YNSKLVTRLINRIM+ GKRG AQ+ILYN+F+L++ER+G +PMEVF+ A+KNIMPVLEVK
Sbjct: 17  IYNSKLVTRLINRIMVDGKRGTAQTILYNAFELVKERSGNDPMEVFDQALKNIMPVLEVK 76

Query: 61  ARRVGGANYQVPIEVKPERRTALGLRWLVNYSRNRGEKTMEERLAAEIIDASNNTGASVK 120
           ARRVGG+NYQVPIEVKPERRT LGLRWLVNY+R RGEKTMEERLA EI+DA+NN GA+VK
Sbjct: 77  ARRVGGSNYQVPIEVKPERRTTLGLRWLVNYARLRGEKTMEERLANEILDAANNAGAAVK 136

Query: 121 KREDTHKMAEANKAFAHYRW 140
           KREDTHKMAEANKAFAHYRW
Sbjct: 137 KREDTHKMAEANKAFAHYRW 156


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 760,746,053
Number of extensions: 27453971
Number of successful extensions: 73197
Number of sequences better than 1.0e-05: 2207
Number of HSP's gapped: 73059
Number of HSP's successfully gapped: 2207
Length of query: 140
Length of database: 3,060,696,203
Length adjustment: 104
Effective length of query: 36
Effective length of database: 2,080,910,643
Effective search space: 74912783148
Effective search space used: 74912783148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)