BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0069.p (305 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKH1.1 B3KKH1_9BACI Elongation factor Tu 506 e-142 B1DJX8.1 B1DJX8_9BACL Elongation factor Tu 496 e-138 C0ZIH6.1 EFTU_BREBN Elongation factor Tu 450 e-125 B0A6A7.1 B0A6A7_9CLOT Elongation factor Tu 446 e-123 C1KZK6.1 C1KZK6_LISMC Putative translation elongation factor EF-Tu 439 e-121 >B3KKH1.1 B3KKH1_9BACI Elongation factor Tu Length = 396 Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust. Identities = 251/305 (82%), Positives = 265/305 (86%) Query: 1 MITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFLNKCXXXXXXXXXXXXX 60 MITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFLNKC Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFLNKCDMVEDEELLELVE 151 Query: 61 XXXXXXXNEYEFPGDDTPIIRGSAREALQNPDGDYAQKIVEMFETIDTYIPLPERDTDKP 120 +EY+FPGDDTPI RGSAREALQNP+G++AQKIVEMF+TID YIPLPERDTDKP Sbjct: 152 MEVRDLLSEYDFPGDDTPITRGSAREALQNPEGEWAQKIVEMFKTIDEYIPLPERDTDKP 211 Query: 121 FLMPVEDVFSITGRGTVATGRVERGTVKXXXXXXXXXXHEDKKKSVVTGVEMFRKLLDSA 180 FLMPVEDVFSITGRGTVATGRVERGT+K E+ KKSVVTGVEMFRKLLDSA Sbjct: 212 FLMPVEDVFSITGRGTVATGRVERGTIKVGDEIEIVGIAEETKKSVVTGVEMFRKLLDSA 271 Query: 181 QAGDNIGALLRGVDRNMIERGQVLAKPNSVNPHTEFTAQIYVLTKEEGGRHKPFFTGYRP 240 QAGDNIGALLRGV+R IERGQVLAKP SV PHTEFTAQ+YVL+KEEGGRHKPFFTGYRP Sbjct: 272 QAGDNIGALLRGVERTQIERGQVLAKPASVKPHTEFTAQVYVLSKEEGGRHKPFFTGYRP 331 Query: 241 QFYFRTTDVTGIINLPEGTEMVMPGDNITVTVQLISPIAIEEGTKFSIREGGRTVGAGTV 300 QFYFRTTDVTG+INLPEG+EMVMPGDNITVTV LISPIAIEEGTKFSIREGGRTVGAG+V Sbjct: 332 QFYFRTTDVTGVINLPEGSEMVMPGDNITVTVNLISPIAIEEGTKFSIREGGRTVGAGSV 391 Query: 301 ASIQK 305 ASI K Sbjct: 392 ASIIK 396 >B1DJX8.1 B1DJX8_9BACL Elongation factor Tu Length = 396 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 246/305 (80%), Positives = 261/305 (85%) Query: 1 MITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFLNKCXXXXXXXXXXXXX 60 MITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFLNKC Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFLNKCDMVEDEELLELVE 151 Query: 61 XXXXXXXNEYEFPGDDTPIIRGSAREALQNPDGDYAQKIVEMFETIDTYIPLPERDTDKP 120 NEYEFPGDDTPIIRG+AREALQNPDG +A KIVE+FE +DTYIP PERDT KP Sbjct: 152 MEVRDLLNEYEFPGDDTPIIRGAAREALQNPDGPWADKIVELFEQVDTYIPTPERDTAKP 211 Query: 121 FLMPVEDVFSITGRGTVATGRVERGTVKXXXXXXXXXXHEDKKKSVVTGVEMFRKLLDSA 180 FLMPVEDVF+ITGRGTVATGR++RG VK E+ +KSVVTGVEMFRKL+DSA Sbjct: 212 FLMPVEDVFTITGRGTVATGRIDRGVVKVGDEIEIVGLAEETRKSVVTGVEMFRKLMDSA 271 Query: 181 QAGDNIGALLRGVDRNMIERGQVLAKPNSVNPHTEFTAQIYVLTKEEGGRHKPFFTGYRP 240 QAGDNIGALLRGVDR IERGQVLAKP SV PHT FTAQIYVLTKEEGGRHKPFFTGYRP Sbjct: 272 QAGDNIGALLRGVDRKDIERGQVLAKPASVKPHTNFTAQIYVLTKEEGGRHKPFFTGYRP 331 Query: 241 QFYFRTTDVTGIINLPEGTEMVMPGDNITVTVQLISPIAIEEGTKFSIREGGRTVGAGTV 300 QFYFRTTDVTGIINLPEGTEMVMPGDNITVTV+LI+PIA+EEGT+FSIREGGRTVGAG V Sbjct: 332 QFYFRTTDVTGIINLPEGTEMVMPGDNITVTVELIAPIAVEEGTRFSIREGGRTVGAGAV 391 Query: 301 ASIQK 305 A+IQK Sbjct: 392 ATIQK 396 >C0ZIH6.1 EFTU_BREBN Elongation factor Tu Length = 396 Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/303 (71%), Positives = 246/303 (81%) Query: 1 MITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFLNKCXXXXXXXXXXXXX 60 MITGAAQMDGAILVVSAADGPMPQTREHILLS+QVGVPYIVVF+NKC Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPYIVVFMNKCDMVDDEELLELVE 151 Query: 61 XXXXXXXNEYEFPGDDTPIIRGSAREALQNPDGDYAQKIVEMFETIDTYIPLPERDTDKP 120 ++YEFPGDDTP+I+GSA+EAL NP G++A+KI E+ E +D+YIP PER TDKP Sbjct: 152 MEIRDLLSQYEFPGDDTPVIKGSAKEALDNPTGEWAKKIGELMEAVDSYIPTPERATDKP 211 Query: 121 FLMPVEDVFSITGRGTVATGRVERGTVKXXXXXXXXXXHEDKKKSVVTGVEMFRKLLDSA 180 FLMPVEDVF+ITGRGTVATGRVERG VK E+ K + VTGVEMFRKLLD A Sbjct: 212 FLMPVEDVFTITGRGTVATGRVERGIVKVGDQVEIIGLAEETKNTTVTGVEMFRKLLDQA 271 Query: 181 QAGDNIGALLRGVDRNMIERGQVLAKPNSVNPHTEFTAQIYVLTKEEGGRHKPFFTGYRP 240 QAGDNIGALLRGVDRN IERGQ LAKP SV P+T+F A++YVL+KEEGGRH PFF YRP Sbjct: 272 QAGDNIGALLRGVDRNDIERGQCLAKPGSVKPYTKFKAEVYVLSKEEGGRHTPFFANYRP 331 Query: 241 QFYFRTTDVTGIINLPEGTEMVMPGDNITVTVQLISPIAIEEGTKFSIREGGRTVGAGTV 300 QFYFRTTDVTGII LPEG EM+MPGDN TV+LI+P+A+E+GT+F+IREGGRTVGAG V Sbjct: 332 QFYFRTTDVTGIIQLPEGVEMIMPGDNTEFTVELIAPVAMEQGTRFAIREGGRTVGAGVV 391 Query: 301 ASI 303 ASI Sbjct: 392 ASI 394 >B0A6A7.1 B0A6A7_9CLOT Elongation factor Tu Length = 397 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 220/303 (72%), Positives = 241/303 (79%) Query: 1 MITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFLNKCXXXXXXXXXXXXX 60 MITGAAQMDGAILVVSA DGPMPQTREHILLSRQVGVPYIVVFLNKC Sbjct: 93 MITGAAQMDGAILVVSATDGPMPQTREHILLSRQVGVPYIVVFLNKCDMVDDEELLELVE 152 Query: 61 XXXXXXXNEYEFPGDDTPIIRGSAREALQNPDGDYAQKIVEMFETIDTYIPLPERDTDKP 120 +EYEFPGDDTPIIRGSA +AL++P ++ KIVE+FE ID YIP PERD DKP Sbjct: 153 MEIRELLDEYEFPGDDTPIIRGSALKALEDPSSEWGDKIVELFEQIDEYIPAPERDVDKP 212 Query: 121 FLMPVEDVFSITGRGTVATGRVERGTVKXXXXXXXXXXHEDKKKSVVTGVEMFRKLLDSA 180 FLMPVEDVFSITGRGTVATGRVERG +K E+ +K VVTG+EMFRKLLDSA Sbjct: 213 FLMPVEDVFSITGRGTVATGRVERGQLKVQDEVEIVGLTEETRKVVVTGIEMFRKLLDSA 272 Query: 181 QAGDNIGALLRGVDRNMIERGQVLAKPNSVNPHTEFTAQIYVLTKEEGGRHKPFFTGYRP 240 +AGDNIGALLRGV R IERGQVLAKP +VN HT+FTA+IYVL KEEGGRH PFF GYRP Sbjct: 273 EAGDNIGALLRGVQRTEIERGQVLAKPGTVNAHTKFTAEIYVLKKEEGGRHTPFFDGYRP 332 Query: 241 QFYFRTTDVTGIINLPEGTEMVMPGDNITVTVQLISPIAIEEGTKFSIREGGRTVGAGTV 300 QFYFRTTDVTG LPEGTEMVMPGDNIT+ V LI+ I +EEG +F+IREGGRTV +G V Sbjct: 333 QFYFRTTDVTGACKLPEGTEMVMPGDNITIEVDLINKICVEEGLRFAIREGGRTVASGVV 392 Query: 301 ASI 303 ASI Sbjct: 393 ASI 395 >C1KZK6.1 C1KZK6_LISMC Putative translation elongation factor EF-Tu Length = 395 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 220/305 (72%), Positives = 242/305 (79%), Gaps = 1/305 (0%) Query: 1 MITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFLNKCXXXXXXXXXXXXX 60 MITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVF+NKC Sbjct: 92 MITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKCDMVDDEELLELVE 151 Query: 61 XXXXXXXNEYEFPGDDTPIIRGSAREALQNPDGDYAQKIVEMFETIDTYIPLPERDTDKP 120 EYEFPGDD P+I+GSA +ALQ + D+ KI E+ E +D+YIP PERDTDKP Sbjct: 152 MEIRDLLTEYEFPGDDIPVIKGSALKALQG-EADWEAKIDELMEAVDSYIPTPERDTDKP 210 Query: 121 FLMPVEDVFSITGRGTVATGRVERGTVKXXXXXXXXXXHEDKKKSVVTGVEMFRKLLDSA 180 F+MPVEDVFSITGRGTVATGRVERG VK E+ KK VVTGVEMFRKLLD A Sbjct: 211 FMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYA 270 Query: 181 QAGDNIGALLRGVDRNMIERGQVLAKPNSVNPHTEFTAQIYVLTKEEGGRHKPFFTGYRP 240 +AGDNIGALLRGV R I+RGQVLAKP S+ PHT F A+ YVLTKEEGGRH PFF YRP Sbjct: 271 EAGDNIGALLRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRP 330 Query: 241 QFYFRTTDVTGIINLPEGTEMVMPGDNITVTVQLISPIAIEEGTKFSIREGGRTVGAGTV 300 QFYFRTTDVTGI+ LPEGTEMVMPGDNI + V+LI+PIAIE+GTKFSIREGGRTVGAG V Sbjct: 331 QFYFRTTDVTGIVTLPEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVV 390 Query: 301 ASIQK 305 ++I K Sbjct: 391 SNISK 395 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,640,844,666 Number of extensions: 64871373 Number of successful extensions: 211860 Number of sequences better than 1.0e-05: 12937 Number of HSP's gapped: 193437 Number of HSP's successfully gapped: 12988 Length of query: 305 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 170 Effective length of database: 1,788,859,178 Effective search space: 304106060260 Effective search space used: 304106060260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)