BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0065.p
         (102 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKG8.1 B3KKG8_9BACI Ribosomal protein S10                           206   8e-52
B1DJX4.1 B1DJX4_9BACL Ribosomal protein S10                           205   9e-52
B4AN31.1 B4AN31_BACPU Ribosomal protein S10                           200   4e-50
P21471.4 RS10_BACSU 30S ribosomal protein S10                         200   4e-50
A8F984.1 RS10_BACP2 30S ribosomal protein S10                         200   4e-50

>B3KKG8.1 B3KKG8_9BACI Ribosomal protein S10
          Length = 102

 Score =  206 bits (523), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 101/102 (99%), Positives = 102/102 (100%)

Query: 1   MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD 60
           MAKQKIRIRLKAYDHR+LDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD
Sbjct: 1   MAKQKIRIRLKAYDHRVLDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD 60

Query: 61  SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102
           SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL
Sbjct: 61  SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102


>B1DJX4.1 B1DJX4_9BACL Ribosomal protein S10
          Length = 102

 Score =  205 bits (522), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 101/102 (99%), Positives = 102/102 (100%)

Query: 1   MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD 60
           MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQ+ITILRAVHKYKD
Sbjct: 1   MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQIITILRAVHKYKD 60

Query: 61  SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102
           SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL
Sbjct: 61  SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102


>B4AN31.1 B4AN31_BACPU Ribosomal protein S10
          Length = 102

 Score =  200 bits (508), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 99/102 (97%), Positives = 99/102 (97%)

Query: 1   MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD 60
           MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGA VSGPIPLPTEK V TILRAVHKYKD
Sbjct: 1   MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSVYTILRAVHKYKD 60

Query: 61  SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102
           SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL
Sbjct: 61  SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102


>P21471.4 RS10_BACSU 30S ribosomal protein S10
          Length = 102

 Score =  200 bits (508), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 99/102 (97%), Positives = 99/102 (97%)

Query: 1   MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD 60
           MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGA VSGPIPLPTEK V TILRAVHKYKD
Sbjct: 1   MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSVYTILRAVHKYKD 60

Query: 61  SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102
           SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL
Sbjct: 61  SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102


>A8F984.1 RS10_BACP2 30S ribosomal protein S10
          Length = 102

 Score =  200 bits (508), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 99/102 (97%), Positives = 99/102 (97%)

Query: 1   MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGAGVSGPIPLPTEKQVITILRAVHKYKD 60
           MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGA VSGPIPLPTEK V TILRAVHKYKD
Sbjct: 1   MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSVYTILRAVHKYKD 60

Query: 61  SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102
           SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL
Sbjct: 61  SREQFEMRTHKRLIDIVNPTPQTVDALMRLDLPSGVDIEIKL 102


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.135    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 577,768,790
Number of extensions: 20786541
Number of successful extensions: 61048
Number of sequences better than 1.0e-05: 1591
Number of HSP's gapped: 61184
Number of HSP's successfully gapped: 1591
Length of query: 102
Length of database: 3,060,696,203
Length adjustment: 70
Effective length of query: 32
Effective length of database: 2,401,225,153
Effective search space: 76839204896
Effective search space used: 76839204896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)