BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0064.p (207 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKG7.1 B3KKG7_9BACI 50S ribosomal protein L3 365 1e-99 B1DJX3.1 B1DJX3_9BACL 50S ribosomal protein L3 350 4e-95 C0ZII0.1 RL3_BREBN 50S ribosomal protein L3 300 5e-80 Q65PA7.1 RL3_BACLD 50S ribosomal protein L3 286 1e-75 Q9Z9L4.1 RL3_BACHD 50S ribosomal protein L3 285 2e-75 >B3KKG7.1 B3KKG7_9BACI 50S ribosomal protein L3 Length = 207 Score = 365 bits (937), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 173/207 (83%), Positives = 193/207 (93%) Query: 1 LKGILGKKLGMTQVFTPEGNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRS 60 +KGILG+KLGMTQVFTPEG VI V+VIEAGPCVVLQKKDL DGYEA+Q+GFSDKKE+RS Sbjct: 1 MKGILGRKLGMTQVFTPEGVVIPVTVIEAGPCVVLQKKDLENDGYEAIQVGFSDKKENRS 60 Query: 61 NKPEQGHAKKANATPKRYVREIRGVDLGALEVGQELKADIFTEGEFVDVTGTTKGKGFQG 120 NKPE GHAKKAN PKRYVREIRGVDL ++EVGQELKAD+F EGEFVDVTG +KGKGFQG Sbjct: 61 NKPEAGHAKKANTAPKRYVREIRGVDLASVEVGQELKADVFAEGEFVDVTGISKGKGFQG 120 Query: 121 VIKRWGQSRGPMAHGSRYHRRPGSMGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVDV 180 VIKRWGQSRGPM+HGSRYHRRPGSMGSIQANRVPKGKRLPGHMG+ TVT+Q+LE++KVD Sbjct: 121 VIKRWGQSRGPMSHGSRYHRRPGSMGSIQANRVPKGKRLPGHMGNETVTIQKLEVVKVDA 180 Query: 181 ERNVLLVKGAIPGPKNSFVKVKETVKK 207 ERNV+LVKG+IPGPK FV++KETVKK Sbjct: 181 ERNVILVKGSIPGPKKGFVQIKETVKK 207 >B1DJX3.1 B1DJX3_9BACL 50S ribosomal protein L3 Length = 207 Score = 350 bits (898), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 169/206 (82%), Positives = 185/206 (89%) Query: 1 LKGILGKKLGMTQVFTPEGNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRS 60 +KGILGKKLGMTQVFT EGNV+ V+VIEAGPCVVLQKKD DGYEAVQ GFSDKKE+R+ Sbjct: 1 MKGILGKKLGMTQVFTAEGNVVPVTVIEAGPCVVLQKKDQENDGYEAVQFGFSDKKEARA 60 Query: 61 NKPEQGHAKKANATPKRYVREIRGVDLGALEVGQELKADIFTEGEFVDVTGTTKGKGFQG 120 KPE GHAKKAN PKRYVREIRG++LG EVGQE+KAD+F EGEFVDVTG +KGKGF G Sbjct: 61 IKPEIGHAKKANTAPKRYVREIRGINLGEYEVGQEVKADLFAEGEFVDVTGISKGKGFAG 120 Query: 121 VIKRWGQSRGPMAHGSRYHRRPGSMGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVDV 180 VIKRWGQS GPMAHGSRYHR PGSMGSIQANRVPKGK LPGHMGH TVT+Q+LEII+VD Sbjct: 121 VIKRWGQSTGPMAHGSRYHRGPGSMGSIQANRVPKGKHLPGHMGHETVTIQKLEIIRVDA 180 Query: 181 ERNVLLVKGAIPGPKNSFVKVKETVK 206 ERNV+LVKG+IPGPKN FVKVK+TVK Sbjct: 181 ERNVILVKGSIPGPKNGFVKVKQTVK 206 >C0ZII0.1 RL3_BREBN 50S ribosomal protein L3 Length = 209 Score = 300 bits (769), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 146/206 (70%), Positives = 165/206 (80%) Query: 2 KGILGKKLGMTQVFTPEGNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRSN 61 KGILGKKLGMTQVF P G AV+VIE G VVLQKKD+ DGYEA+Q+GF DKKE R+N Sbjct: 3 KGILGKKLGMTQVFGPNGTATAVTVIEVGSNVVLQKKDVETDGYEAIQIGFEDKKEQRAN 62 Query: 62 KPEQGHAKKANATPKRYVREIRGVDLGALEVGQELKADIFTEGEFVDVTGTTKGKGFQGV 121 KPE+GHA KAN PKR++REIRGV+L EVGQELKADIF EGE VDV G +KGKGFQG Sbjct: 63 KPEKGHAAKANTAPKRFIREIRGVNLADYEVGQELKADIFAEGEMVDVAGVSKGKGFQGA 122 Query: 122 IKRWGQSRGPMAHGSRYHRRPGSMGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVDVE 181 IKR QSRGPMAHGSRYHR PGSMG++ NRV KG+ LPG MG VT+Q LE+IKVD E Sbjct: 123 IKRHNQSRGPMAHGSRYHRGPGSMGAVAPNRVFKGQTLPGQMGGDNVTIQNLEVIKVDTE 182 Query: 182 RNVLLVKGAIPGPKNSFVKVKETVKK 207 RN++LVKG++PGPKNS V V VKK Sbjct: 183 RNLVLVKGSVPGPKNSCVLVSTAVKK 208 >Q65PA7.1 RL3_BACLD 50S ribosomal protein L3 Length = 209 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/205 (67%), Positives = 162/205 (79%) Query: 2 KGILGKKLGMTQVFTPEGNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRSN 61 KGILG+K+GMTQVF G++I V+VIEA P VVLQKK DGYEA+Q+GF DK+E +N Sbjct: 3 KGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTSENDGYEAIQIGFDDKREKLAN 62 Query: 62 KPEQGHAKKANATPKRYVREIRGVDLGALEVGQELKADIFTEGEFVDVTGTTKGKGFQGV 121 KPE+GH KA PKR+V+E+RGVD+ A EVGQE+K DIF+ GE VDVTGT+KGKGFQG Sbjct: 63 KPEKGHVAKAETAPKRFVKELRGVDMDAYEVGQEVKVDIFSNGEIVDVTGTSKGKGFQGA 122 Query: 122 IKRWGQSRGPMAHGSRYHRRPGSMGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVDVE 181 IKR GQSRGPM+HGSRYHRRPGSMG + NRV KGK LPG MG +TVQ LEI+KVD E Sbjct: 123 IKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAE 182 Query: 182 RNVLLVKGAIPGPKNSFVKVKETVK 206 RN+LLVKG +PG K S V VK VK Sbjct: 183 RNLLLVKGNVPGAKKSLVTVKSAVK 207 >Q9Z9L4.1 RL3_BACHD 50S ribosomal protein L3 Length = 209 Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/205 (67%), Positives = 163/205 (79%) Query: 2 KGILGKKLGMTQVFTPEGNVIAVSVIEAGPCVVLQKKDLNIDGYEAVQLGFSDKKESRSN 61 KGILGKK+GMTQVF G+VI V+VIEA P VVLQKK ++ DGYEAVQLGF D+K++ +N Sbjct: 3 KGILGKKVGMTQVFAENGDVIPVTVIEAAPNVVLQKKTVDSDGYEAVQLGFDDQKQNNAN 62 Query: 62 KPEQGHAKKANATPKRYVREIRGVDLGALEVGQELKADIFTEGEFVDVTGTTKGKGFQGV 121 KPE+GHA KA PKR+++EIRGV+L EVGQE+K D F EG+ VDVTGT+KGKGF G Sbjct: 63 KPEKGHAAKAETAPKRFIKEIRGVNLDEFEVGQEIKVDAFAEGDIVDVTGTSKGKGFAGA 122 Query: 122 IKRWGQSRGPMAHGSRYHRRPGSMGSIQANRVPKGKRLPGHMGHTTVTVQRLEIIKVDVE 181 IKR Q+RGPM+HGSRYHRRPGSMG + NRV KGK LPG MG VTVQ LEIIKVD E Sbjct: 123 IKRHNQARGPMSHGSRYHRRPGSMGPVDPNRVFKGKALPGRMGGEQVTVQNLEIIKVDAE 182 Query: 182 RNVLLVKGAIPGPKNSFVKVKETVK 206 RN+LLVKG +PG K S+V V+ +K Sbjct: 183 RNLLLVKGNVPGAKKSYVTVRSAIK 207 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,234,295,798 Number of extensions: 50501775 Number of successful extensions: 82719 Number of sequences better than 1.0e-05: 1733 Number of HSP's gapped: 80211 Number of HSP's successfully gapped: 1733 Length of query: 207 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 78 Effective length of database: 1,845,385,268 Effective search space: 143940050904 Effective search space used: 143940050904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)