BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0063.p (207 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKG6.1 B3KKG6_9BACI Ribosomal protein L4/L1e 352 9e-96 B1DJX2.1 B1DJX2_9BACL Ribosomal protein L4/L1e 333 6e-90 Q9Z9L3.1 RL4_BACHD 50S ribosomal protein L4 302 1e-80 A4IJJ0.1 RL4_GEOTN 50S ribosomal protein L4 302 2e-80 B4BSS3.1 B4BSS3_9BACI Ribosomal protein L4/L1e 301 3e-80 >B3KKG6.1 B3KKG6_9BACI Ribosomal protein L4/L1e Length = 207 Score = 352 bits (904), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 174/207 (84%), Positives = 184/207 (88%) Query: 1 MPKVTLFNIXXXXXXXXXXXXTVFGIEPNVHVLHEAVLMQRASLRRGTHKVKGRSEVRGG 60 MPKV L+N+ VFGIEPN HVLH AVL+QRASLRRGTHKVKGRSEVRGG Sbjct: 1 MPKVALYNVSGSQVGEVELNEAVFGIEPNAHVLHSAVLLQRASLRRGTHKVKGRSEVRGG 60 Query: 61 GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYSWKLPKKVRRLAIKSALSSKVIG 120 GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSY++KLPKKVRRLAIKSALSSKVI Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYTFKLPKKVRRLAIKSALSSKVID 120 Query: 121 NDIIVLDSLTMNAPKTKEFAAILNNLKVGSKALIVAPSYDDNVALSARNIPGVKFLAADG 180 N IIVLD LT+N PKTKEFA IL+NLKVG KALIVAPSYDDNVALSARNIPGVKF+AADG Sbjct: 121 NAIIVLDQLTLNTPKTKEFANILSNLKVGRKALIVAPSYDDNVALSARNIPGVKFVAADG 180 Query: 181 INVLDVLTYDKLIITKEAVQKVEEVFA 207 INVLDVL+YD+LIITKEAVQKVEEV A Sbjct: 181 INVLDVLSYDQLIITKEAVQKVEEVLA 207 >B1DJX2.1 B1DJX2_9BACL Ribosomal protein L4/L1e Length = 207 Score = 333 bits (854), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 163/207 (78%), Positives = 178/207 (85%) Query: 1 MPKVTLFNIXXXXXXXXXXXXTVFGIEPNVHVLHEAVLMQRASLRRGTHKVKGRSEVRGG 60 MPKVT+FN+ +VFGIEPN HVLH AVL+Q+A+ R GTHK KGRSEVRGG Sbjct: 1 MPKVTVFNVSGSEVGEIELADSVFGIEPNSHVLHSAVLLQQAAERAGTHKTKGRSEVRGG 60 Query: 61 GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYSWKLPKKVRRLAIKSALSSKVIG 120 GRKPWKQKGTGRARQGSIRSPQW GGG VFGPTPRSY +KLPKKVRRLAIKSALSSKVI Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYGFKLPKKVRRLAIKSALSSKVIA 120 Query: 121 NDIIVLDSLTMNAPKTKEFAAILNNLKVGSKALIVAPSYDDNVALSARNIPGVKFLAADG 180 N+I+VLD LT APKTKEFAAILNNLK KAL+V P+YDDNVALSARNIPGVKF+AADG Sbjct: 121 NEIVVLDQLTFAAPKTKEFAAILNNLKADRKALVVLPAYDDNVALSARNIPGVKFVAADG 180 Query: 181 INVLDVLTYDKLIITKEAVQKVEEVFA 207 INVLDVL +DKLIITKEAV+KV+EVFA Sbjct: 181 INVLDVLVHDKLIITKEAVEKVQEVFA 207 >Q9Z9L3.1 RL4_BACHD 50S ribosomal protein L4 Length = 207 Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 147/207 (71%), Positives = 170/207 (82%) Query: 1 MPKVTLFNIXXXXXXXXXXXXTVFGIEPNVHVLHEAVLMQRASLRRGTHKVKGRSEVRGG 60 MPKV L+N VFGIEPN +VLH+AV+MQ+ASLR+GTHK K RSEVRGG Sbjct: 1 MPKVALYNQAGSQVGDIELSDAVFGIEPNENVLHDAVVMQQASLRQGTHKTKTRSEVRGG 60 Query: 61 GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYSWKLPKKVRRLAIKSALSSKVIG 120 GRKPW+QKGTGRARQGSIRSPQW GGG VFGPTPRSYS+KLPKKVRRLAIKSALSSKV Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKA 120 Query: 121 NDIIVLDSLTMNAPKTKEFAAILNNLKVGSKALIVAPSYDDNVALSARNIPGVKFLAADG 180 +I+VL+SL + APKTKE A+IL+ L V KAL+V Y+DNVALSARNIPGV F+ A+G Sbjct: 121 EEIVVLESLALEAPKTKEMASILSGLSVDRKALVVTADYNDNVALSARNIPGVTFVTAEG 180 Query: 181 INVLDVLTYDKLIITKEAVQKVEEVFA 207 +NVLDV+ +DKLIITK+AV+KVEEV A Sbjct: 181 VNVLDVIKHDKLIITKDAVEKVEEVLA 207 >A4IJJ0.1 RL4_GEOTN 50S ribosomal protein L4 Length = 207 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 148/207 (71%), Positives = 168/207 (81%) Query: 1 MPKVTLFNIXXXXXXXXXXXXTVFGIEPNVHVLHEAVLMQRASLRRGTHKVKGRSEVRGG 60 MPKV L+N VFGIEPN HVL EAV+MQRAS+R+GTHK K R+EV GG Sbjct: 1 MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60 Query: 61 GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYSWKLPKKVRRLAIKSALSSKVIG 120 GRKPW+QKGTGRARQGSIRSPQW+GGG VFGP PRSYS+KLPKKVRRLAIKSALSSKV+ Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIIVLDSLTMNAPKTKEFAAILNNLKVGSKALIVAPSYDDNVALSARNIPGVKFLAADG 180 NDI+VLD L++ APKTKE ILNNL V KALIV ++NV LSARNIPGVK +AA+G Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVTDELNENVYLSARNIPGVKVVAANG 180 Query: 181 INVLDVLTYDKLIITKEAVQKVEEVFA 207 INVLDVL++DKL+ITK AV+KVEEV A Sbjct: 181 INVLDVLSHDKLVITKAAVEKVEEVLA 207 >B4BSS3.1 B4BSS3_9BACI Ribosomal protein L4/L1e Length = 207 Score = 301 bits (771), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 148/207 (71%), Positives = 167/207 (80%) Query: 1 MPKVTLFNIXXXXXXXXXXXXTVFGIEPNVHVLHEAVLMQRASLRRGTHKVKGRSEVRGG 60 MPKV L+N VFGIEPN HVL EAV+MQRAS+R+GTHK K R+EV GG Sbjct: 1 MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60 Query: 61 GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYSWKLPKKVRRLAIKSALSSKVIG 120 GRKPW+QKGTGRARQGSIRSPQW+GGG VFGP PRSYS+KLPKKVRRLAIKSALSSKV+ Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120 Query: 121 NDIIVLDSLTMNAPKTKEFAAILNNLKVGSKALIVAPSYDDNVALSARNIPGVKFLAADG 180 NDI+VLD L++ APKTKE ILNNL V KALIV ++NV LSARNIPGVK +AA+G Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVTDELNENVYLSARNIPGVKVVAANG 180 Query: 181 INVLDVLTYDKLIITKEAVQKVEEVFA 207 INVLDVL +DKL+ITK AV+KVEEV A Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEEVLA 207 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,109,088,632 Number of extensions: 45531868 Number of successful extensions: 112288 Number of sequences better than 1.0e-05: 1632 Number of HSP's gapped: 110989 Number of HSP's successfully gapped: 1632 Length of query: 207 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 78 Effective length of database: 1,845,385,268 Effective search space: 143940050904 Effective search space used: 143940050904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)