BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0061.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKG4.1 B3KKG4_9BACI Ribosomal protein L2 494 e-138 B1DJX0.1 B1DJX0_9BACL Ribosomal protein L2 475 e-132 Q9Z9L1.1 RL2_BACHD 50S ribosomal protein L2 446 e-124 C3IDJ0.1 C3IDJ0_BACTU 50S ribosomal protein L2 443 e-123 C3HUF2.1 C3HUF2_BACTU 50S ribosomal protein L2 443 e-123 >B3KKG4.1 B3KKG4_9BACI Ribosomal protein L2 Length = 276 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 245/261 (93%), Positives = 251/261 (96%) Query: 1 MSVSTFEEITTNQPEKSLLAPLSKKAGRNNQGKITVRHHGGGHKRKYRIIDFKRTKDGIP 60 MSVSTFEEITTNQPEKSLLAPLSK AGRNNQGKITVRHHGGGHKRKYRIIDFKR KDGIP Sbjct: 16 MSVSTFEEITTNQPEKSLLAPLSKTAGRNNQGKITVRHHGGGHKRKYRIIDFKRNKDGIP 75 Query: 61 GSVATIEYDPNRTSNIALIHYADGEKRYIIAPKGLKVGDKVESGPAADIKIGNSLPLENI 120 G VATIEYDPNRTSNIALIHY DGEKRYIIAPKGLKVGD+V SG ADIKIGN+LPLENI Sbjct: 76 GRVATIEYDPNRTSNIALIHYVDGEKRYIIAPKGLKVGDQVVSGVGADIKIGNALPLENI 135 Query: 121 PVGTVIHNIELKPGKGGQLVRAAGTEAQLLGKEEKYVSVRLNSGEVRRILSVCRATIGSV 180 PVGTVIHNIELKPGKGGQLVRAAGTEAQLLGKE+KYV+VRL+SGEVRRIL VCRATIGSV Sbjct: 136 PVGTVIHNIELKPGKGGQLVRAAGTEAQLLGKEDKYVTVRLSSGEVRRILKVCRATIGSV 195 Query: 181 GNEDHELIKIGKAGRSRWLGQRPEVRGVVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTL 240 GN+DHELIKIGKAGRSRWLGQRPEVRGVVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTL Sbjct: 196 GNQDHELIKIGKAGRSRWLGQRPEVRGVVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTL 255 Query: 241 GYKTRKKNKASDKYIVRRRTK 261 G KTRKK KASDKYIVRRRTK Sbjct: 256 GAKTRKKGKASDKYIVRRRTK 276 >B1DJX0.1 B1DJX0_9BACL Ribosomal protein L2 Length = 276 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 232/261 (88%), Positives = 246/261 (94%) Query: 1 MSVSTFEEITTNQPEKSLLAPLSKKAGRNNQGKITVRHHGGGHKRKYRIIDFKRTKDGIP 60 MSVSTFEEITT+ PEKSLLAPL K+AGRNNQGKITVRHHGGGHKRKYRIIDFKRTKDG+ Sbjct: 16 MSVSTFEEITTSTPEKSLLAPLFKRAGRNNQGKITVRHHGGGHKRKYRIIDFKRTKDGVV 75 Query: 61 GSVATIEYDPNRTSNIALIHYADGEKRYIIAPKGLKVGDKVESGPAADIKIGNSLPLENI 120 G VA++EYDPNRTSNIALIHY DGEK YIIAPKGLKVGD+V SGP ADIKIGN+LPL NI Sbjct: 76 GKVASVEYDPNRTSNIALIHYIDGEKAYIIAPKGLKVGDQVVSGPDADIKIGNALPLINI 135 Query: 121 PVGTVIHNIELKPGKGGQLVRAAGTEAQLLGKEEKYVSVRLNSGEVRRILSVCRATIGSV 180 PVGTVIHNIELKPGKGGQLVRAAGT+AQLLGKE YVSVRL SGEVRRILS CRATIGSV Sbjct: 136 PVGTVIHNIELKPGKGGQLVRAAGTDAQLLGKEGDYVSVRLTSGEVRRILSTCRATIGSV 195 Query: 181 GNEDHELIKIGKAGRSRWLGQRPEVRGVVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTL 240 GNEDHEL+KIGKAGRSRW+G+RPEVRGVVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTL Sbjct: 196 GNEDHELVKIGKAGRSRWMGKRPEVRGVVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTL 255 Query: 241 GYKTRKKNKASDKYIVRRRTK 261 G+KTRKK KAS +YI+RRRTK Sbjct: 256 GFKTRKKKKASSQYIIRRRTK 276 >Q9Z9L1.1 RL2_BACHD 50S ribosomal protein L2 Length = 276 Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/261 (83%), Positives = 234/261 (89%) Query: 1 MSVSTFEEITTNQPEKSLLAPLSKKAGRNNQGKITVRHHGGGHKRKYRIIDFKRTKDGIP 60 MS F EITT++PEKSLLAPL KK GRNNQGK+TVRH GGGHKR+YRIIDFKR KDGIP Sbjct: 16 MSTLDFAEITTDKPEKSLLAPLHKKGGRNNQGKMTVRHQGGGHKRQYRIIDFKRNKDGIP 75 Query: 61 GSVATIEYDPNRTSNIALIHYADGEKRYIIAPKGLKVGDKVESGPAADIKIGNSLPLENI 120 G VATIEYDPNR++NIALI+Y DGEKRYI+APKGLKVG +ESGP ADIK+GN+LPL+NI Sbjct: 76 GRVATIEYDPNRSANIALINYVDGEKRYILAPKGLKVGMTIESGPEADIKVGNALPLKNI 135 Query: 121 PVGTVIHNIELKPGKGGQLVRAAGTEAQLLGKEEKYVSVRLNSGEVRRILSVCRATIGSV 180 PVGTVIHNIELKPGKGGQLVR+AG EAQLLGKE YV VRLNSGE R IL+ CRATIG V Sbjct: 136 PVGTVIHNIELKPGKGGQLVRSAGAEAQLLGKEGDYVLVRLNSGETRYILATCRATIGQV 195 Query: 181 GNEDHELIKIGKAGRSRWLGQRPEVRGVVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTL 240 GN +HEL+ IGKAGRSRWLG+RP VRG MNPNDHPHGGGEGRAPIGRKSPMSPWGKPTL Sbjct: 196 GNLEHELVNIGKAGRSRWLGKRPTVRGSAMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTL 255 Query: 241 GYKTRKKNKASDKYIVRRRTK 261 GYKTRKKNKASDKYIVRRR K Sbjct: 256 GYKTRKKNKASDKYIVRRRKK 276 >C3IDJ0.1 C3IDJ0_BACTU 50S ribosomal protein L2 Length = 276 Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/261 (82%), Positives = 237/261 (90%) Query: 1 MSVSTFEEITTNQPEKSLLAPLSKKAGRNNQGKITVRHHGGGHKRKYRIIDFKRTKDGIP 60 M+ + F EITT++PEKSLLAPLSKKAGRNNQGKITVRH GGGHKR+YRIIDFKR KDGIP Sbjct: 16 MTTNDFAEITTDRPEKSLLAPLSKKAGRNNQGKITVRHQGGGHKRQYRIIDFKRNKDGIP 75 Query: 61 GSVATIEYDPNRTSNIALIHYADGEKRYIIAPKGLKVGDKVESGPAADIKIGNSLPLENI 120 G VATIEYDPNR++NIALI+Y DGEKRYI+APK L+VG +V SGP ADIKIGN+LPL NI Sbjct: 76 GRVATIEYDPNRSANIALINYVDGEKRYILAPKSLEVGMEVMSGPEADIKIGNALPLINI 135 Query: 121 PVGTVIHNIELKPGKGGQLVRAAGTEAQLLGKEEKYVSVRLNSGEVRRILSVCRATIGSV 180 PVGTV+HNIELKPG+GGQLVR+AGT AQ+LGKE KYV VRL SGEVR +LS CRA+IG V Sbjct: 136 PVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKEGKYVLVRLTSGEVRLVLSACRASIGQV 195 Query: 181 GNEDHELIKIGKAGRSRWLGQRPEVRGVVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTL 240 GNE HELIKIGKAGRSRWLG+RP VRG VMNP DHPHGGGEGR+PIGRKSPMSPWGKPTL Sbjct: 196 GNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPMSPWGKPTL 255 Query: 241 GYKTRKKNKASDKYIVRRRTK 261 G+KTRKKNKASDK+IVRRR K Sbjct: 256 GFKTRKKNKASDKFIVRRRKK 276 >C3HUF2.1 C3HUF2_BACTU 50S ribosomal protein L2 Length = 276 Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/261 (82%), Positives = 237/261 (90%) Query: 1 MSVSTFEEITTNQPEKSLLAPLSKKAGRNNQGKITVRHHGGGHKRKYRIIDFKRTKDGIP 60 M+ + F EITT++PEKSLLAPLSKKAGRNNQGKITVRH GGGHKR+YRIIDFKR KDGIP Sbjct: 16 MTTNDFAEITTDRPEKSLLAPLSKKAGRNNQGKITVRHQGGGHKRQYRIIDFKRNKDGIP 75 Query: 61 GSVATIEYDPNRTSNIALIHYADGEKRYIIAPKGLKVGDKVESGPAADIKIGNSLPLENI 120 G VATIEYDPNR++NIALI+Y DGEKRYI+APK L+VG +V SGP ADIKIGN+LPL NI Sbjct: 76 GRVATIEYDPNRSANIALINYVDGEKRYILAPKSLEVGMEVMSGPEADIKIGNALPLINI 135 Query: 121 PVGTVIHNIELKPGKGGQLVRAAGTEAQLLGKEEKYVSVRLNSGEVRRILSVCRATIGSV 180 PVGTV+HNIELKPG+GGQLVR+AGT AQ+LGKE KYV VRL SGEVR +LS CRA+IG V Sbjct: 136 PVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKEGKYVLVRLTSGEVRLVLSACRASIGQV 195 Query: 181 GNEDHELIKIGKAGRSRWLGQRPEVRGVVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTL 240 GNE HELIKIGKAGRSRWLG+RP VRG VMNP DHPHGGGEGR+PIGRKSPMSPWGKPTL Sbjct: 196 GNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPMSPWGKPTL 255 Query: 241 GYKTRKKNKASDKYIVRRRTK 261 G+KTRKKNKASDK+IVRRR K Sbjct: 256 GFKTRKKNKASDKFIVRRRKK 276 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,694,157,826 Number of extensions: 76505087 Number of successful extensions: 126093 Number of sequences better than 1.0e-05: 2769 Number of HSP's gapped: 123338 Number of HSP's successfully gapped: 2791 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)