BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0060.p
         (92 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKG3.1 B3KKG3_9BACI Ribosomal protein S19                           173   6e-42
Q65PA3.1 RS19_BACLD 30S ribosomal protein S19                         167   3e-40
P21476.3 RS19_BACSU 30S ribosomal protein S19                         166   5e-40
A7Z0P2.1 RS19_BACA2 30S ribosomal protein S19                         166   5e-40
B7YDT6.1 B7YDT6_9BACI Ribosomal protein S19                           164   3e-39

>B3KKG3.1 B3KKG3_9BACI Ribosomal protein S19
          Length = 91

 Score =  173 bits (438), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 84/92 (91%), Positives = 87/92 (94%), Gaps = 1/92 (1%)

Query: 1  MGRSLKKGPFIDGYLLKKVEELNAADKKVVVKTWSRRSTIFPQFIGHTFGVYDGRKHVPV 60
          M RSLKKGPFIDGYLLKKVE++NAA KK V+KTWSRRSTIFPQFIGHTFGVYDGRKHVPV
Sbjct: 1  MSRSLKKGPFIDGYLLKKVEDMNAASKKAVIKTWSRRSTIFPQFIGHTFGVYDGRKHVPV 60

Query: 61 YVTEDMVGHKLGEFAPTRTYKGHAGDDKKTRR 92
          YVTEDMVGHKLGEFAPTRTYKGH  DDKKTRR
Sbjct: 61 YVTEDMVGHKLGEFAPTRTYKGHE-DDKKTRR 91


>Q65PA3.1 RS19_BACLD 30S ribosomal protein S19
          Length = 92

 Score =  167 bits (423), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/92 (83%), Positives = 84/92 (91%)

Query: 1  MGRSLKKGPFIDGYLLKKVEELNAADKKVVVKTWSRRSTIFPQFIGHTFGVYDGRKHVPV 60
          M RSLKKGPF+D +L+ K+E+LN ADKK VVKTWSRRSTIFPQFIGHT  VYDGRKHVPV
Sbjct: 1  MARSLKKGPFVDDHLMTKIEKLNEADKKQVVKTWSRRSTIFPQFIGHTIAVYDGRKHVPV 60

Query: 61 YVTEDMVGHKLGEFAPTRTYKGHAGDDKKTRR 92
          Y++EDMVGHKLGEFAPTRTYKGHA DDKKTRR
Sbjct: 61 YISEDMVGHKLGEFAPTRTYKGHASDDKKTRR 92


>P21476.3 RS19_BACSU 30S ribosomal protein S19
          Length = 92

 Score =  166 bits (421), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 84/92 (91%)

Query: 1  MGRSLKKGPFIDGYLLKKVEELNAADKKVVVKTWSRRSTIFPQFIGHTFGVYDGRKHVPV 60
          M RSLKKGPF+DG+L+ K+E+LN  DKK VVKTWSRRSTIFPQFIGHT  VYDGRKHVPV
Sbjct: 1  MARSLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQFIGHTIAVYDGRKHVPV 60

Query: 61 YVTEDMVGHKLGEFAPTRTYKGHAGDDKKTRR 92
          +++EDMVGHKLGEFAPTRTYKGHA DDKKTRR
Sbjct: 61 FISEDMVGHKLGEFAPTRTYKGHASDDKKTRR 92


>A7Z0P2.1 RS19_BACA2 30S ribosomal protein S19
          Length = 92

 Score =  166 bits (421), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 84/92 (91%)

Query: 1  MGRSLKKGPFIDGYLLKKVEELNAADKKVVVKTWSRRSTIFPQFIGHTFGVYDGRKHVPV 60
          M RSLKKGPF+DG+L+ K+E+LN  DKK VVKTWSRRSTIFPQFIGHT  VYDGRKHVPV
Sbjct: 1  MARSLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQFIGHTIAVYDGRKHVPV 60

Query: 61 YVTEDMVGHKLGEFAPTRTYKGHAGDDKKTRR 92
          +++EDMVGHKLGEFAPTRTYKGHA DDKKTRR
Sbjct: 61 FISEDMVGHKLGEFAPTRTYKGHASDDKKTRR 92


>B7YDT6.1 B7YDT6_9BACI Ribosomal protein S19
          Length = 92

 Score =  164 bits (414), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 85/92 (92%)

Query: 1  MGRSLKKGPFIDGYLLKKVEELNAADKKVVVKTWSRRSTIFPQFIGHTFGVYDGRKHVPV 60
          MGRSLKKGPF D +L+KK+E+LNA  +K V+KTWSRRSTIFPQF+GHT  VYDGRKHVPV
Sbjct: 1  MGRSLKKGPFCDEHLMKKIEKLNATGQKQVIKTWSRRSTIFPQFVGHTIAVYDGRKHVPV 60

Query: 61 YVTEDMVGHKLGEFAPTRTYKGHAGDDKKTRR 92
          Y+TEDMVGHKLGEFAPTRT++GHAGDDKKT+R
Sbjct: 61 YITEDMVGHKLGEFAPTRTFRGHAGDDKKTKR 92


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 586,825,506
Number of extensions: 21849397
Number of successful extensions: 48042
Number of sequences better than 1.0e-05: 2648
Number of HSP's gapped: 47870
Number of HSP's successfully gapped: 2648
Length of query: 92
Length of database: 3,060,696,203
Length adjustment: 61
Effective length of query: 31
Effective length of database: 2,486,014,288
Effective search space: 77066442928
Effective search space used: 77066442928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)