BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0059.p
         (110 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKG2.1 B3KKG2_9BACI 50S ribosomal protein L22                       201   2e-50
B1DJW8.1 B1DJW8_9BACL 50S ribosomal protein L22                       194   2e-48
Q2B2M0.1 Q2B2M0_9BACI 50S ribosomal protein L22                       186   6e-46
C3HCF9.1 C3HCF9_BACTU 50S ribosomal protein L22                       186   8e-46
C3GCY7.1 C3GCY7_BACTU 50S ribosomal protein L22                       186   8e-46

>B3KKG2.1 B3KKG2_9BACI 50S ribosomal protein L22
          Length = 110

 Score =  201 bits (511), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/110 (87%), Positives = 105/110 (95%)

Query: 1   MEAKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEH 60
           MEAKAHARS+RI+ RKA+LVVDLIRGKQVGEAIAILRHTPK+ASPVVEKLLNSAIANAEH
Sbjct: 1   MEAKAHARSIRIAPRKAQLVVDLIRGKQVGEAIAILRHTPKAASPVVEKLLNSAIANAEH 60

Query: 61  NYSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110
           NYS+DV  L V++ +VNQGPTMKRFRPRAMGRASRINKRTSHITLVV+EK
Sbjct: 61  NYSLDVTKLVVTQAYVNQGPTMKRFRPRAMGRASRINKRTSHITLVVAEK 110


>B1DJW8.1 B1DJW8_9BACL 50S ribosomal protein L22
          Length = 111

 Score =  194 bits (493), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/109 (85%), Positives = 101/109 (92%)

Query: 2   EAKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEHN 61
           EAKAHA  VRI+ RKA+LV DLIRGKQVGEAIAILRHTPKSASP++EKLLNSAIANAEHN
Sbjct: 3   EAKAHANFVRIAPRKAQLVADLIRGKQVGEAIAILRHTPKSASPILEKLLNSAIANAEHN 62

Query: 62  YSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110
           Y +DVN L +++ FVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK
Sbjct: 63  YQLDVNKLVITQAFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 111


>Q2B2M0.1 Q2B2M0_9BACI 50S ribosomal protein L22
          Length = 113

 Score =  186 bits (472), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 103/110 (93%)

Query: 1   MEAKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEH 60
           M+AKA AR+VRI+ RKA+LVVDLIRGKQVGEA+AIL HTPK+ASPVVEKLL SA+ANAEH
Sbjct: 1   MQAKAVARTVRIAPRKARLVVDLIRGKQVGEAVAILNHTPKAASPVVEKLLKSALANAEH 60

Query: 61  NYSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110
           NY MDVN+L VS+VFV++GPT+KRFRPRAMGRAS INKRTSHIT+V+SEK
Sbjct: 61  NYEMDVNNLVVSQVFVDEGPTLKRFRPRAMGRASAINKRTSHITIVLSEK 110


>C3HCF9.1 C3HCF9_BACTU 50S ribosomal protein L22
          Length = 113

 Score =  186 bits (471), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 102/110 (92%)

Query: 1   MEAKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEH 60
           M+AKA AR+VRI+ RK +LVVDLIRGKQVGEAIAIL HTPK+ASPVVEK+L SAIANAEH
Sbjct: 1   MQAKAVARTVRIAPRKVRLVVDLIRGKQVGEAIAILNHTPKTASPVVEKVLKSAIANAEH 60

Query: 61  NYSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110
           NY MD+NSL V +VFV++GPT+KRFRPRAMGRAS+INKRTSHIT+VVSEK
Sbjct: 61  NYEMDINSLVVEKVFVDEGPTLKRFRPRAMGRASQINKRTSHITVVVSEK 110


>C3GCY7.1 C3GCY7_BACTU 50S ribosomal protein L22
          Length = 113

 Score =  186 bits (471), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 102/110 (92%)

Query: 1   MEAKAHARSVRISARKAKLVVDLIRGKQVGEAIAILRHTPKSASPVVEKLLNSAIANAEH 60
           M+AKA AR+VRI+ RK +LVVDLIRGKQVGEAIAIL HTPK+ASPVVEK+L SAIANAEH
Sbjct: 1   MQAKAVARTVRIAPRKVRLVVDLIRGKQVGEAIAILNHTPKTASPVVEKVLKSAIANAEH 60

Query: 61  NYSMDVNSLFVSEVFVNQGPTMKRFRPRAMGRASRINKRTSHITLVVSEK 110
           NY MD+NSL V +VFV++GPT+KRFRPRAMGRAS+INKRTSHIT+VVSEK
Sbjct: 61  NYEMDINSLVVEKVFVDEGPTLKRFRPRAMGRASQINKRTSHITVVVSEK 110


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.128    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 512,113,197
Number of extensions: 15743225
Number of successful extensions: 46579
Number of sequences better than 1.0e-05: 1882
Number of HSP's gapped: 46457
Number of HSP's successfully gapped: 1882
Length of query: 110
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 33
Effective length of database: 2,335,278,048
Effective search space: 77064175584
Effective search space used: 77064175584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)