BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0057.p
         (128 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKG0.1 B3KKG0_9BACI 50S ribosomal protein L16                       245   9e-64
B1DJW6.1 B1DJW6_9BACL 50S ribosomal protein L16                       238   2e-61
C0ZII7.1 RL16_BREBN 50S ribosomal protein L16                         222   1e-56
Q2B2M2.1 Q2B2M2_9BACI 50S ribosomal protein L16                       218   2e-55
A8W1E5.1 A8W1E5_9BACI 50S ribosomal protein L16                       218   2e-55

>B3KKG0.1 B3KKG0_9BACI 50S ribosomal protein L16
          Length = 144

 Score =  245 bits (625), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 121/128 (94%), Positives = 125/128 (97%)

Query: 1   MKGMAKGGTELNFGEFGLQALEPSWITNRQIEAARIAMTRYIKRGGQVWIKIFPDKPITQ 60
           M+G AKGGTELNFGEFGLQA EP WITNRQIEAARIAMTRYI+RGG+VWIKIFPDKPITQ
Sbjct: 17  MRGQAKGGTELNFGEFGLQATEPGWITNRQIEAARIAMTRYIRRGGKVWIKIFPDKPITQ 76

Query: 61  KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE 120
           KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE
Sbjct: 77  KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE 136

Query: 121 LGGEANES 128
           +GGEANES
Sbjct: 137 VGGEANES 144


>B1DJW6.1 B1DJW6_9BACL 50S ribosomal protein L16
          Length = 144

 Score =  238 bits (606), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/128 (89%), Positives = 124/128 (96%)

Query: 1   MKGMAKGGTELNFGEFGLQALEPSWITNRQIEAARIAMTRYIKRGGQVWIKIFPDKPITQ 60
           M+G AKGGTE+ FGE+GLQALEP+WITNRQIEAARIAMTRYIKRGG+VWIKIFP KPITQ
Sbjct: 17  MRGRAKGGTEVAFGEYGLQALEPTWITNRQIEAARIAMTRYIKRGGKVWIKIFPHKPITQ 76

Query: 61  KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE 120
           KPLEVRMGSGKGNVEKWVAVVKPGKIMFEL GVSEE+AREAMRLA+HKLP+KTKFVKREE
Sbjct: 77  KPLEVRMGSGKGNVEKWVAVVKPGKIMFELAGVSEEVAREAMRLASHKLPIKTKFVKREE 136

Query: 121 LGGEANES 128
           +GGEANES
Sbjct: 137 VGGEANES 144


>C0ZII7.1 RL16_BREBN 50S ribosomal protein L16
          Length = 144

 Score =  222 bits (565), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/127 (83%), Positives = 118/127 (92%)

Query: 1   MKGMAKGGTELNFGEFGLQALEPSWITNRQIEAARIAMTRYIKRGGQVWIKIFPDKPITQ 60
           M G AKGGT + FGE+GLQA+EPSW+TNRQIEAARIAMTRYIKRGG+VWIKIFPDKP+TQ
Sbjct: 17  MAGNAKGGTTVAFGEYGLQAMEPSWVTNRQIEAARIAMTRYIKRGGKVWIKIFPDKPVTQ 76

Query: 61  KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE 120
           KPLEVRMGSGKG+ EKWVAVVKPGKIMFEL GV EE+AREAMRLA HKLP+K KFVKREE
Sbjct: 77  KPLEVRMGSGKGSPEKWVAVVKPGKIMFELAGVPEEVAREAMRLAMHKLPIKCKFVKREE 136

Query: 121 LGGEANE 127
           +GG+A+E
Sbjct: 137 VGGDAHE 143


>Q2B2M2.1 Q2B2M2_9BACI 50S ribosomal protein L16
          Length = 144

 Score =  218 bits (555), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/128 (82%), Positives = 117/128 (91%)

Query: 1   MKGMAKGGTELNFGEFGLQALEPSWITNRQIEAARIAMTRYIKRGGQVWIKIFPDKPITQ 60
           M+G +KGGTE+NFGEFGLQALE SWITNRQIE+ARIAMTRY+KRGG+VWI IFP KP T 
Sbjct: 17  MRGQSKGGTEVNFGEFGLQALEASWITNRQIESARIAMTRYMKRGGKVWINIFPHKPYTA 76

Query: 61  KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE 120
           KPLEVRMGSGKG  E WVAVVKPGKIMFE+ GVSEE+AREA+RLA+HKLPVK KFVKREE
Sbjct: 77  KPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLASHKLPVKCKFVKREE 136

Query: 121 LGGEANES 128
           +GGE+NES
Sbjct: 137 IGGESNES 144


>A8W1E5.1 A8W1E5_9BACI 50S ribosomal protein L16
          Length = 144

 Score =  218 bits (555), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/128 (82%), Positives = 118/128 (92%)

Query: 1   MKGMAKGGTELNFGEFGLQALEPSWITNRQIEAARIAMTRYIKRGGQVWIKIFPDKPITQ 60
           M+G AKGG E+ FGE+GLQALE SWITNRQIE+ARIAMTRY+KRGG+VWIKIFPDKP T 
Sbjct: 17  MRGRAKGGKEIAFGEYGLQALEASWITNRQIESARIAMTRYMKRGGKVWIKIFPDKPYTS 76

Query: 61  KPLEVRMGSGKGNVEKWVAVVKPGKIMFELGGVSEEIAREAMRLAAHKLPVKTKFVKREE 120
           KPLEVRMGSGKG  E WVAVVKPGKIMFE+ GVSEE+AREA+RLA+HKLPV+TKFVKREE
Sbjct: 77  KPLEVRMGSGKGAPEGWVAVVKPGKIMFEIAGVSEEVAREALRLASHKLPVRTKFVKREE 136

Query: 121 LGGEANES 128
           +GG+ANES
Sbjct: 137 VGGDANES 144


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 795,670,340
Number of extensions: 29662906
Number of successful extensions: 116653
Number of sequences better than 1.0e-05: 2256
Number of HSP's gapped: 116512
Number of HSP's successfully gapped: 2256
Length of query: 128
Length of database: 3,060,696,203
Length adjustment: 93
Effective length of query: 35
Effective length of database: 2,184,541,808
Effective search space: 76458963280
Effective search space used: 76458963280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)