BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0056.p
         (65 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKF9.1 B3KKF9_9BACI Ribosomal protein L29                           124   4e-27
B1DJW5.1 B1DJW5_9BACL Ribosomal protein L29                           112   7e-24
Q9Z9K6.2 RL29_BACHD 50S ribosomal protein L29                         107   4e-22
A8W1E3.1 A8W1E3_9BACI Ribosomal protein L3                            102   9e-21
Q5WLQ4.1 RL29_BACSK 50S ribosomal protein L29                         101   2e-20

>B3KKF9.1 B3KKF9_9BACI Ribosomal protein L29
          Length = 65

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/65 (95%), Positives = 63/65 (96%)

Query: 1  MKANELRNLTTAEIEQKIAGFKEELFNLRFQLATGQLDNPTRIRDVRKEIARAKTVIHQR 60
          MKANELRNLTTAEIEQKIAGFKEELFNLRFQLATGQLDNPTRIRDVRKEIARAKTVI +R
Sbjct: 1  MKANELRNLTTAEIEQKIAGFKEELFNLRFQLATGQLDNPTRIRDVRKEIARAKTVIRER 60

Query: 61 VLGIS 65
           LGIS
Sbjct: 61 ELGIS 65


>B1DJW5.1 B1DJW5_9BACL Ribosomal protein L29
          Length = 66

 Score =  112 bits (281), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 54/65 (83%), Positives = 61/65 (93%)

Query: 1  MKANELRNLTTAEIEQKIAGFKEELFNLRFQLATGQLDNPTRIRDVRKEIARAKTVIHQR 60
          MKA+E RNLT+AEIE KIAGFKEELFNLRFQLATGQL++PTRIRDVRK IARAKT++H+R
Sbjct: 1  MKASEFRNLTSAEIEVKIAGFKEELFNLRFQLATGQLESPTRIRDVRKNIARAKTILHER 60

Query: 61 VLGIS 65
           LGIS
Sbjct: 61 QLGIS 65


>Q9Z9K6.2 RL29_BACHD 50S ribosomal protein L29
          Length = 67

 Score =  107 bits (267), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 57/65 (87%)

Query: 1  MKANELRNLTTAEIEQKIAGFKEELFNLRFQLATGQLDNPTRIRDVRKEIARAKTVIHQR 60
          MK NELRNLTTAEIEQK    KEELFNLRFQLATGQLDNPTRIR+VRK IARAKTV+ +R
Sbjct: 1  MKTNELRNLTTAEIEQKTKSLKEELFNLRFQLATGQLDNPTRIREVRKNIARAKTVLRER 60

Query: 61 VLGIS 65
           LGI+
Sbjct: 61 ELGIN 65


>A8W1E3.1 A8W1E3_9BACI Ribosomal protein L3
          Length = 71

 Score =  102 bits (255), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 57/65 (87%)

Query: 1  MKANELRNLTTAEIEQKIAGFKEELFNLRFQLATGQLDNPTRIRDVRKEIARAKTVIHQR 60
          MKAN++RNLTTAEIEQK    KEELFNLRFQLATGQLDNP RIR+V++ IARAKTV+ +R
Sbjct: 5  MKANDIRNLTTAEIEQKSKSLKEELFNLRFQLATGQLDNPARIREVKRSIARAKTVLRER 64

Query: 61 VLGIS 65
           LGI+
Sbjct: 65 ELGIT 69


>Q5WLQ4.1 RL29_BACSK 50S ribosomal protein L29
          Length = 67

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 56/65 (86%)

Query: 1  MKANELRNLTTAEIEQKIAGFKEELFNLRFQLATGQLDNPTRIRDVRKEIARAKTVIHQR 60
          MKA +LR+LTTAEIEQK    KEELFNLRFQLATGQLDNP RIR+VRK IARAKTV+ +R
Sbjct: 1  MKATDLRDLTTAEIEQKTQSLKEELFNLRFQLATGQLDNPVRIREVRKSIARAKTVLRER 60

Query: 61 VLGIS 65
           LGI+
Sbjct: 61 ELGIN 65


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.135    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 310,111,959
Number of extensions: 8466676
Number of successful extensions: 26949
Number of sequences better than 1.0e-05: 765
Number of HSP's gapped: 27052
Number of HSP's successfully gapped: 765
Length of query: 65
Length of database: 3,060,696,203
Length adjustment: 37
Effective length of query: 28
Effective length of database: 2,712,118,648
Effective search space: 75939322144
Effective search space used: 75939322144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)