BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0055.p
         (88 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKF8.1 B3KKF8_9BACI 30S ribosomal protein S17                       156   7e-37
B1DJW4.1 B1DJW4_9BACL 30S ribosomal protein S17                       136   6e-31
B7GJ76.1 RS17_ANOFW 30S ribosomal protein S17                         134   4e-30
Q65P98.1 RS17_BACLD 30S ribosomal protein S17                         132   9e-30
B4AN22.1 B4AN22_BACPU 30S ribosomal protein S17                       132   1e-29

>B3KKF8.1 B3KKF8_9BACI 30S ribosomal protein S17
          Length = 88

 Score =  156 bits (394), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 78/88 (88%), Positives = 82/88 (93%)

Query: 1  MSEERNARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIGD 60
          MSEERNARKV IGKVVSDKMDKTIV+AVETYKKH+LYHKRIK TKKFKAHDE N A+IGD
Sbjct: 1  MSEERNARKVQIGKVVSDKMDKTIVVAVETYKKHDLYHKRIKYTKKFKAHDENNQAQIGD 60

Query: 61 IVKVMETRPLSKDKRWRLVEVVEAAVII 88
           VK+METRPLSKDKRWRLVEVVE AVII
Sbjct: 61 TVKIMETRPLSKDKRWRLVEVVEKAVII 88


>B1DJW4.1 B1DJW4_9BACL 30S ribosomal protein S17
          Length = 87

 Score =  136 bits (343), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/75 (89%), Positives = 71/75 (94%)

Query: 4  ERNARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIGDIVK 63
          ERNARKV IGKVVSDKMDKTIV+AVETYKKH+LYHKRIK TKKFKAHDE N AKIGDIVK
Sbjct: 3  ERNARKVQIGKVVSDKMDKTIVVAVETYKKHDLYHKRIKYTKKFKAHDENNQAKIGDIVK 62

Query: 64 VMETRPLSKDKRWRL 78
          +METRPLSKDKR+RL
Sbjct: 63 IMETRPLSKDKRFRL 77


>B7GJ76.1 RS17_ANOFW 30S ribosomal protein S17
          Length = 87

 Score =  134 bits (336), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/85 (76%), Positives = 75/85 (88%)

Query: 4  ERNARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIGDIVK 63
          ERN RKVL+G+VVSDKMDKTI + VETYKKH LY KR+K +KK+KAHDE NVAK+GDIVK
Sbjct: 3  ERNNRKVLVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDENNVAKVGDIVK 62

Query: 64 VMETRPLSKDKRWRLVEVVEAAVII 88
          +METRPLS  KR+RLVEVVE AVI+
Sbjct: 63 IMETRPLSATKRFRLVEVVEKAVIV 87


>Q65P98.1 RS17_BACLD 30S ribosomal protein S17
          Length = 87

 Score =  132 bits (332), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 73/85 (85%)

Query: 4  ERNARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIGDIVK 63
          ERN RKV  G+VVSDKMDKTI + VETYKKH+LY KR+K +KKFKAHDE N AKIGDIVK
Sbjct: 3  ERNQRKVYQGRVVSDKMDKTITVVVETYKKHSLYGKRVKYSKKFKAHDENNQAKIGDIVK 62

Query: 64 VMETRPLSKDKRWRLVEVVEAAVII 88
          +METRPLS  KR+RLVEVVE AVII
Sbjct: 63 IMETRPLSATKRFRLVEVVEEAVII 87


>B4AN22.1 B4AN22_BACPU 30S ribosomal protein S17
          Length = 87

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 73/85 (85%)

Query: 4  ERNARKVLIGKVVSDKMDKTIVIAVETYKKHNLYHKRIKSTKKFKAHDEENVAKIGDIVK 63
          ERN RKV  G+VVSDKMDKTI + VETYKKH+LY KR++ +KKFKAHDE N AKIGDIVK
Sbjct: 3  ERNQRKVYQGRVVSDKMDKTITVVVETYKKHSLYGKRVRYSKKFKAHDENNQAKIGDIVK 62

Query: 64 VMETRPLSKDKRWRLVEVVEAAVII 88
          VMETRPLS  KR+RLVEVVE AVII
Sbjct: 63 VMETRPLSATKRFRLVEVVEEAVII 87


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.131    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 432,491,704
Number of extensions: 13237762
Number of successful extensions: 49593
Number of sequences better than 1.0e-05: 1526
Number of HSP's gapped: 49745
Number of HSP's successfully gapped: 1526
Length of query: 88
Length of database: 3,060,696,203
Length adjustment: 58
Effective length of query: 30
Effective length of database: 2,514,277,333
Effective search space: 75428319990
Effective search space used: 75428319990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)