BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0054.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKF7.1 B3KKF7_9BACI 50S ribosomal protein L14                       189   7e-47
B1DJW3.1 B1DJW3_9BACL 50S ribosomal protein L14                       184   2e-45
C0ZIJ0.1 RL14_BREBN 50S ribosomal protein L14                         171   2e-41
Q9Z9K4.1 RL14_BACHD 50S ribosomal protein L14                         166   7e-40
C1TJR7.1 C1TJR7_9FIRM LSU ribosomal protein L14P                      164   2e-39

>B3KKF7.1 B3KKF7_9BACI 50S ribosomal protein L14
          Length = 122

 Score =  189 bits (480), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 96/122 (78%), Positives = 98/122 (80%)

Query: 1   MIQPFTRLHVADNSGAKELMCIRVLGGTGRRTAAIGDLIVCSVKQATPGGXXXXXXXXXX 60
           MIQPFTRL VADNSGAKELMCIRVLGGTGRRTA IGDLIVCSVKQATPGG          
Sbjct: 1   MIQPFTRLAVADNSGAKELMCIRVLGGTGRRTAQIGDLIVCSVKQATPGGVVKKGDVVRA 60

Query: 61  XXXXXXXXXXXXDGSYISFDENAAVVVKDDRSPRGTRIFGPVARELRDKDYMKIVSLAPE 120
                       DGSYISFDENAAVVVKDDRSPRGTRIFGPVARELR++DYMKIVSLAPE
Sbjct: 61  VIVRTKRSVRRKDGSYISFDENAAVVVKDDRSPRGTRIFGPVARELRERDYMKIVSLAPE 120

Query: 121 VI 122
           VI
Sbjct: 121 VI 122


>B1DJW3.1 B1DJW3_9BACL 50S ribosomal protein L14
          Length = 122

 Score =  184 bits (468), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 97/122 (79%)

Query: 1   MIQPFTRLHVADNSGAKELMCIRVLGGTGRRTAAIGDLIVCSVKQATPGGXXXXXXXXXX 60
           MIQPFTRL VADNSGAKELMCIRVLGGTGRR  AIGDLIVCSVKQATPGG          
Sbjct: 1   MIQPFTRLRVADNSGAKELMCIRVLGGTGRRVGAIGDLIVCSVKQATPGGVVKKGDVVKA 60

Query: 61  XXXXXXXXXXXXDGSYISFDENAAVVVKDDRSPRGTRIFGPVARELRDKDYMKIVSLAPE 120
                       DGSYI+FDENAAV+VK+D+SPRGTRIFGPVARELRDKD+MKIVSLAPE
Sbjct: 61  VIVRTKRAVRRKDGSYIAFDENAAVIVKEDKSPRGTRIFGPVARELRDKDFMKIVSLAPE 120

Query: 121 VI 122
           VI
Sbjct: 121 VI 122


>C0ZIJ0.1 RL14_BREBN 50S ribosomal protein L14
          Length = 122

 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 94/122 (77%)

Query: 1   MIQPFTRLHVADNSGAKELMCIRVLGGTGRRTAAIGDLIVCSVKQATPGGXXXXXXXXXX 60
           MIQ  TRL VADNSGAKELMCI+VLGG+GR+TA IGD+IVCSVK ATPGG          
Sbjct: 1   MIQTQTRLAVADNSGAKELMCIKVLGGSGRKTANIGDVIVCSVKSATPGGVVKKGQVVKA 60

Query: 61  XXXXXXXXXXXXDGSYISFDENAAVVVKDDRSPRGTRIFGPVARELRDKDYMKIVSLAPE 120
                       DGSYI FDENAAVV+KDD+SPRGTRIFGPVARELRDKD+MKI+SLAPE
Sbjct: 61  VVVRTVSGVRRNDGSYIRFDENAAVVIKDDQSPRGTRIFGPVARELRDKDFMKIISLAPE 120

Query: 121 VI 122
           VI
Sbjct: 121 VI 122


>Q9Z9K4.1 RL14_BACHD 50S ribosomal protein L14
          Length = 122

 Score =  166 bits (419), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 93/122 (76%)

Query: 1   MIQPFTRLHVADNSGAKELMCIRVLGGTGRRTAAIGDLIVCSVKQATPGGXXXXXXXXXX 60
           MIQ  +RL VADNSGA+EL+CI+VLGG+GR+TA IGD+IVCSVKQATPGG          
Sbjct: 1   MIQQESRLKVADNSGARELLCIKVLGGSGRKTANIGDVIVCSVKQATPGGVVKKGDVVKA 60

Query: 61  XXXXXXXXXXXXDGSYISFDENAAVVVKDDRSPRGTRIFGPVARELRDKDYMKIVSLAPE 120
                       DGSYI FDENAAV+V+DD+SPRGTRIFGPVARELRD  +MKIVSLAPE
Sbjct: 61  VIVRSKSGVRRNDGSYIKFDENAAVIVRDDKSPRGTRIFGPVARELRDNQFMKIVSLAPE 120

Query: 121 VI 122
           V+
Sbjct: 121 VL 122


>C1TJR7.1 C1TJR7_9FIRM LSU ribosomal protein L14P
          Length = 122

 Score =  164 bits (415), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 92/122 (75%)

Query: 1   MIQPFTRLHVADNSGAKELMCIRVLGGTGRRTAAIGDLIVCSVKQATPGGXXXXXXXXXX 60
           MIQ  TRL+VADN+GA++L+CIRVLGG  R+ A IGD IVCSVK+ATPGG          
Sbjct: 1   MIQAETRLNVADNTGARKLLCIRVLGGAHRKYARIGDTIVCSVKEATPGGVVKKGDVVKA 60

Query: 61  XXXXXXXXXXXXDGSYISFDENAAVVVKDDRSPRGTRIFGPVARELRDKDYMKIVSLAPE 120
                       DG+YI FDENAAV++KDD+SPRGTRIFGPVARELRDKDYMKIVSLAPE
Sbjct: 61  VVVRTKKELRRNDGTYIKFDENAAVIIKDDKSPRGTRIFGPVARELRDKDYMKIVSLAPE 120

Query: 121 VI 122
           VI
Sbjct: 121 VI 122


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 599,580,303
Number of extensions: 17259312
Number of successful extensions: 31916
Number of sequences better than 1.0e-05: 1954
Number of HSP's gapped: 29849
Number of HSP's successfully gapped: 1954
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)