BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0053.p
         (114 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKF6.1 B3KKF6_9BACI Ribosomal protein L24                           187   2e-46
B1DJW2.1 B1DJW2_9BACL Ribosomal protein L24                           181   2e-44
C0ZIJ1.1 RL24_BREBN 50S ribosomal protein L24                         149   9e-35
A3IG99.1 A3IG99_9BACI 50S ribosomal protein L24                       140   2e-32
B1HMW9.1 RL24_LYSSC 50S ribosomal protein L24                         140   2e-32

>B3KKF6.1 B3KKF6_9BACI Ribosomal protein L24
          Length = 118

 Score =  187 bits (476), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 101/114 (88%)

Query: 1   VKKVLESHNNXXXXXXXXXXXXISGKDKGKKGRVIAAYPRENRVLVEGVNMVKKHQKPNQ 60
           VKKVLESH+N            ISGKDKGKKGRVIAAYPRENRVLVEGVNM+KKHQKPNQ
Sbjct: 4   VKKVLESHSNKLHVKKDDTVIVISGKDKGKKGRVIAAYPRENRVLVEGVNMIKKHQKPNQ 63

Query: 61  LNPQGGIIEQEASIHVSNVMHIDPKSGKVTRIGYKVLDNGKKVRVAKRSGEIID 114
           +NPQGGIIE+EA IHVSNVMH+DPKSGKVTRIGYKVLDNGKKVRVAKRSGE+ID
Sbjct: 64  MNPQGGIIEKEAPIHVSNVMHVDPKSGKVTRIGYKVLDNGKKVRVAKRSGEVID 117


>B1DJW2.1 B1DJW2_9BACL Ribosomal protein L24
          Length = 117

 Score =  181 bits (459), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/114 (79%), Positives = 98/114 (85%)

Query: 1   VKKVLESHNNXXXXXXXXXXXXISGKDKGKKGRVIAAYPRENRVLVEGVNMVKKHQKPNQ 60
           +KK+LESHNN            ISGKDKGKKGRVIAAYPRENRVLVEGVN VKKH +P+Q
Sbjct: 4   LKKILESHNNKLHVKKDDTVIVISGKDKGKKGRVIAAYPRENRVLVEGVNFVKKHTRPSQ 63

Query: 61  LNPQGGIIEQEASIHVSNVMHIDPKSGKVTRIGYKVLDNGKKVRVAKRSGEIID 114
           +NPQGGIIEQEA +HVSNVMHIDPKSGKVTRIGYKVLDNGKKVR AKRSGE+ID
Sbjct: 64  VNPQGGIIEQEAPVHVSNVMHIDPKSGKVTRIGYKVLDNGKKVRYAKRSGEVID 117


>C0ZIJ1.1 RL24_BREBN 50S ribosomal protein L24
          Length = 104

 Score =  149 bits (376), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 83/91 (91%)

Query: 24  SGKDKGKKGRVIAAYPRENRVLVEGVNMVKKHQKPNQLNPQGGIIEQEASIHVSNVMHID 83
           +GKDKGKKGRV+AAYP++ RVLVEG+N+VKKH +P+Q NPQGGI+ QEA+IHVSNV  ID
Sbjct: 13  AGKDKGKKGRVLAAYPKKERVLVEGINLVKKHSRPSQANPQGGIVTQEAAIHVSNVSLID 72

Query: 84  PKSGKVTRIGYKVLDNGKKVRVAKRSGEIID 114
           PKSGK TRIGYKVLDNGKKVR AK+SGE++D
Sbjct: 73  PKSGKATRIGYKVLDNGKKVRYAKKSGEVLD 103


>A3IG99.1 A3IG99_9BACI 50S ribosomal protein L24
          Length = 102

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 85/92 (92%), Gaps = 1/92 (1%)

Query: 23  ISGKDKGKKGRVIAAYPRENRVLVEGVNMVKKHQKPNQLNPQGGIIEQEASIHVSNVMHI 82
           I+GKDKGK+G ++AA+P+++RVLVEGVN+VKKH KPNQLNPQGGI+ QEA+IHVSNVM I
Sbjct: 12  ITGKDKGKEGVILAAFPKQDRVLVEGVNIVKKHVKPNQLNPQGGIVSQEAAIHVSNVMLI 71

Query: 83  DPKSGKVTRIGYKVLDNGKKVRVAKRSGEIID 114
           DPKSG+ TR+GYK+ +NGKKVRVAK+SG +ID
Sbjct: 72  DPKSGEPTRVGYKI-ENGKKVRVAKKSGAVID 102


>B1HMW9.1 RL24_LYSSC 50S ribosomal protein L24
          Length = 102

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 85/92 (92%), Gaps = 1/92 (1%)

Query: 23  ISGKDKGKKGRVIAAYPRENRVLVEGVNMVKKHQKPNQLNPQGGIIEQEASIHVSNVMHI 82
           I+GKDKGK+G ++AA+P+++RVLVEGVN+VKKH KPNQLNPQGGI+ QEA+IHVSNVM I
Sbjct: 12  ITGKDKGKEGVILAAFPKQDRVLVEGVNIVKKHVKPNQLNPQGGIVSQEAAIHVSNVMLI 71

Query: 83  DPKSGKVTRIGYKVLDNGKKVRVAKRSGEIID 114
           DPKSG+ TR+GYK+ +NGKKVRVAK+SG +ID
Sbjct: 72  DPKSGEPTRVGYKI-ENGKKVRVAKKSGAVID 102


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 590,912,581
Number of extensions: 20976080
Number of successful extensions: 38374
Number of sequences better than 1.0e-05: 1545
Number of HSP's gapped: 36539
Number of HSP's successfully gapped: 1545
Length of query: 114
Length of database: 3,060,696,203
Length adjustment: 81
Effective length of query: 33
Effective length of database: 2,297,593,988
Effective search space: 75820601604
Effective search space used: 75820601604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)