BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0052.p (180 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKF5.1 B3KKF5_9BACI 50S ribosomal protein L5 341 2e-92 B1DJW1.1 B1DJW1_9BACL 50S ribosomal protein L5 327 3e-88 C0ZIJ2.1 RL5_BREBN 50S ribosomal protein L5 312 8e-84 C5D3S9.1 C5D3S9_9BACI Ribosomal protein L5 298 1e-79 B1HMW8.1 RL5_LYSSC 50S ribosomal protein L5 298 2e-79 >B3KKF5.1 B3KKF5_9BACI 50S ribosomal protein L5 Length = 180 Score = 341 bits (874), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 164/180 (91%), Positives = 174/180 (96%) Query: 1 MAARMKERFLNEITPALMQKFNYTTVMQVPKIEKIVINMGVGDAVQNSKVLDAAVNDMQL 60 MAARMKERFLNE+TPALMQKF+Y TVMQVPKIEK+VINMGVGDAV NSKVLD+AVNDMQL Sbjct: 1 MAARMKERFLNEVTPALMQKFSYKTVMQVPKIEKVVINMGVGDAVANSKVLDSAVNDMQL 60 Query: 61 IAGQKPVITKAKKSIAGFKLRENMPIGVKVTLRGDRMYYFLDKLLNVTLPRVRDFRGVSS 120 IAGQKPVIT+AKKSIAGFKLRENMPIGVKVTLRG+RMYYFLDKL NVTLPRVRDF+GVS+ Sbjct: 61 IAGQKPVITRAKKSIAGFKLRENMPIGVKVTLRGERMYYFLDKLFNVTLPRVRDFQGVST 120 Query: 121 KSFDGRGNYTLGLKDQLIFPEIEYDKVDKARGMDIVIVTTAKTDEESRELLTQLGMPFTK 180 K+FDGRGNYTLGLK+QLIFPEIEYDKVDK RGMDIVIVTTAKTDEESRELL QLGMPF K Sbjct: 121 KAFDGRGNYTLGLKEQLIFPEIEYDKVDKVRGMDIVIVTTAKTDEESRELLAQLGMPFAK 180 >B1DJW1.1 B1DJW1_9BACL 50S ribosomal protein L5 Length = 180 Score = 327 bits (838), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 154/180 (85%), Positives = 174/180 (96%) Query: 1 MAARMKERFLNEITPALMQKFNYTTVMQVPKIEKIVINMGVGDAVQNSKVLDAAVNDMQL 60 MAAR+K++FLN+ITPALMQKFNYTTVMQVPKIEK+VINMGVG+AV NSKVLD AV++++ Sbjct: 1 MAARLKDKFLNDITPALMQKFNYTTVMQVPKIEKVVINMGVGEAVANSKVLDVAVDELRQ 60 Query: 61 IAGQKPVITKAKKSIAGFKLRENMPIGVKVTLRGDRMYYFLDKLLNVTLPRVRDFRGVSS 120 I+GQKPV+T+AKKSIAGFKLRENMPIGVKVTLRG+RMYYFLDKL N++LPRVRDFRGVS+ Sbjct: 61 ISGQKPVVTRAKKSIAGFKLRENMPIGVKVTLRGERMYYFLDKLFNISLPRVRDFRGVST 120 Query: 121 KSFDGRGNYTLGLKDQLIFPEIEYDKVDKARGMDIVIVTTAKTDEESRELLTQLGMPFTK 180 K+FDGRGNYTLGLK+QLIFPEIEYDKVDK RGMDIVIVTTAKTDEESRELLTQ+GMPF K Sbjct: 121 KAFDGRGNYTLGLKEQLIFPEIEYDKVDKVRGMDIVIVTTAKTDEESRELLTQMGMPFAK 180 >C0ZIJ2.1 RL5_BREBN 50S ribosomal protein L5 Length = 180 Score = 312 bits (799), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 141/180 (78%), Positives = 168/180 (93%) Query: 1 MAARMKERFLNEITPALMQKFNYTTVMQVPKIEKIVINMGVGDAVQNSKVLDAAVNDMQL 60 MA R+KE++ +EI P+LM KFNYT++MQVPK+EKI+INMGVG+AV N+K LD A+ D+Q+ Sbjct: 1 MATRLKEKYTSEIVPSLMSKFNYTSIMQVPKVEKIIINMGVGEAVANAKSLDTAIEDLQI 60 Query: 61 IAGQKPVITKAKKSIAGFKLRENMPIGVKVTLRGDRMYYFLDKLLNVTLPRVRDFRGVSS 120 IAGQKPV+TKAKKSIAGFKLRE MPIG KVTLRG+RMY+FLDKL+NV+LPRVRDFRG+SS Sbjct: 61 IAGQKPVVTKAKKSIAGFKLREGMPIGAKVTLRGERMYHFLDKLMNVSLPRVRDFRGISS 120 Query: 121 KSFDGRGNYTLGLKDQLIFPEIEYDKVDKARGMDIVIVTTAKTDEESRELLTQLGMPFTK 180 K+FDGRGNYTLGLK+QLIFPEIEYDK+DK RGMDIV+VT+AKTDEE+RELLTQ+GMPF K Sbjct: 121 KAFDGRGNYTLGLKEQLIFPEIEYDKIDKVRGMDIVVVTSAKTDEEARELLTQMGMPFRK 180 >C5D3S9.1 C5D3S9_9BACI Ribosomal protein L5 Length = 179 Score = 298 bits (764), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 141/177 (79%), Positives = 162/177 (91%) Query: 4 RMKERFLNEITPALMQKFNYTTVMQVPKIEKIVINMGVGDAVQNSKVLDAAVNDMQLIAG 63 R+KE++L E+TPALM KFNY ++MQVPKIEKIVINMGVGDAVQN K LD+AV ++ LIAG Sbjct: 3 RLKEKYLKEVTPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAG 62 Query: 64 QKPVITKAKKSIAGFKLRENMPIGVKVTLRGDRMYYFLDKLLNVTLPRVRDFRGVSSKSF 123 QKPV+T+AKKSIAGF+LR MPIG KVTLRG+RMY FLDKL++V+LPRVRDFRGVS KSF Sbjct: 63 QKPVVTRAKKSIAGFRLRAGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGVSKKSF 122 Query: 124 DGRGNYTLGLKDQLIFPEIEYDKVDKARGMDIVIVTTAKTDEESRELLTQLGMPFTK 180 DGRGNYTLG+K+QLIFPEI+YDKV+K RGMDIVIVTTAKTDEE+RELLT LGMPF K Sbjct: 123 DGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTAKTDEEARELLTLLGMPFQK 179 >B1HMW8.1 RL5_LYSSC 50S ribosomal protein L5 Length = 179 Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/178 (76%), Positives = 162/178 (91%) Query: 3 ARMKERFLNEITPALMQKFNYTTVMQVPKIEKIVINMGVGDAVQNSKVLDAAVNDMQLIA 62 +R+KE++LNE++PALM KF Y +VMQ+PK+EKIVINMGVGDAVQNSK LDAAV ++ +I Sbjct: 2 SRLKEKYLNEVSPALMSKFGYKSVMQLPKVEKIVINMGVGDAVQNSKALDAAVEELTIIT 61 Query: 63 GQKPVITKAKKSIAGFKLRENMPIGVKVTLRGDRMYYFLDKLLNVTLPRVRDFRGVSSKS 122 GQKPV+TKAKKSIAGF+LRE MPIG KVTLRG+RMY FLDKL++++LPRVRDFRGVS K+ Sbjct: 62 GQKPVVTKAKKSIAGFRLREGMPIGAKVTLRGERMYEFLDKLISISLPRVRDFRGVSKKA 121 Query: 123 FDGRGNYTLGLKDQLIFPEIEYDKVDKARGMDIVIVTTAKTDEESRELLTQLGMPFTK 180 FDGRGNYTLG+K+QLIFPEI+YDKV K RGMDIVIVTTA +DEE+RELLTQ GMPF K Sbjct: 122 FDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTANSDEEARELLTQFGMPFQK 179 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 968,127,871 Number of extensions: 37995188 Number of successful extensions: 87427 Number of sequences better than 1.0e-05: 1998 Number of HSP's gapped: 87056 Number of HSP's successfully gapped: 1998 Length of query: 180 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 53 Effective length of database: 1,864,227,298 Effective search space: 98804046794 Effective search space used: 98804046794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)