BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0051.p
         (130 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKF4.1 B3KKF4_9BACI Ribosomal protein S8                            254   2e-66
B1DJV9.1 B1DJV9_9BACL Ribosomal protein S8                            246   4e-64
Q5WLP8.1 RS8_BACSK 30S ribosomal protein S8                           226   7e-58
A7Z0Q2.1 RS8_BACA2 30S ribosomal protein S8                           226   7e-58
P12879.4 RS8_BACSU 30S ribosomal protein S8                           224   2e-57

>B3KKF4.1 B3KKF4_9BACI Ribosomal protein S8
          Length = 132

 Score =  254 bits (649), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/130 (93%), Positives = 128/130 (98%)

Query: 1   MSDPIADMLTRIRNANTVRHETVEMPASTMKKQIADILKREGFIRDAEFVEDSKQGIIRI 60
           MSDPIADMLTRIRNANTVRHETVEMPAST+KKQIADILKREGFIRDAEFVED+KQGIIR+
Sbjct: 3   MSDPIADMLTRIRNANTVRHETVEMPASTIKKQIADILKREGFIRDAEFVEDNKQGIIRV 62

Query: 61  FLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK 120
           FLKYG N ERVI+GLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK
Sbjct: 63  FLKYGSNNERVITGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK 122

Query: 121 SGGEVVCYIW 130
           +GGEV+CY+W
Sbjct: 123 AGGEVLCYVW 132


>B1DJV9.1 B1DJV9_9BACL Ribosomal protein S8
          Length = 132

 Score =  246 bits (629), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 126/130 (96%)

Query: 1   MSDPIADMLTRIRNANTVRHETVEMPASTMKKQIADILKREGFIRDAEFVEDSKQGIIRI 60
           MSDPIADMLTRIRNAN VRHETVE+PAS +KKQIA+ILKREGFIRDAE++ED+KQGIIRI
Sbjct: 3   MSDPIADMLTRIRNANVVRHETVELPASKVKKQIAEILKREGFIRDAEYIEDNKQGIIRI 62

Query: 61  FLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK 120
           FLKYGPNQERVI+GLKRISKPGLRVYTKS E+PRVLGGLGIAIISTSKGVMTDKEARQ K
Sbjct: 63  FLKYGPNQERVITGLKRISKPGLRVYTKSTEIPRVLGGLGIAIISTSKGVMTDKEARQGK 122

Query: 121 SGGEVVCYIW 130
           +GGEVVCY+W
Sbjct: 123 AGGEVVCYVW 132


>Q5WLP8.1 RS8_BACSK 30S ribosomal protein S8
          Length = 132

 Score =  226 bits (575), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 120/130 (92%)

Query: 1   MSDPIADMLTRIRNANTVRHETVEMPASTMKKQIADILKREGFIRDAEFVEDSKQGIIRI 60
           M+DPIADMLTRIRNAN VRHE +E+PAS +KK+IADILKREGFIRD EF+ED+KQG+IRI
Sbjct: 3   MTDPIADMLTRIRNANLVRHEKLELPASMLKKEIADILKREGFIRDYEFIEDNKQGVIRI 62

Query: 61  FLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK 120
           FLKYGP+ ERVI+GLKRISKPGLRVY KS E+PRVLGGLGIA++STSKGV+TDKEARQ +
Sbjct: 63  FLKYGPSNERVITGLKRISKPGLRVYAKSTELPRVLGGLGIALVSTSKGVLTDKEARQQQ 122

Query: 121 SGGEVVCYIW 130
            GGEV+ Y+W
Sbjct: 123 VGGEVLAYVW 132


>A7Z0Q2.1 RS8_BACA2 30S ribosomal protein S8
          Length = 132

 Score =  226 bits (575), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/130 (80%), Positives = 119/130 (91%)

Query: 1   MSDPIADMLTRIRNANTVRHETVEMPASTMKKQIADILKREGFIRDAEFVEDSKQGIIRI 60
           M+DPIADMLTRIRNAN VRHE +E+PAS +K++IADILKREGFIRD EFVEDSKQGIIR+
Sbjct: 3   MTDPIADMLTRIRNANMVRHEKLEIPASKLKREIADILKREGFIRDVEFVEDSKQGIIRV 62

Query: 61  FLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK 120
           FLKYG N ERVI+GLKRISKPGLRVY KSNEVPRVL GLGIAIISTS+GV+TDKEAR  +
Sbjct: 63  FLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQ 122

Query: 121 SGGEVVCYIW 130
           +GGEV+ Y+W
Sbjct: 123 AGGEVLAYVW 132


>P12879.4 RS8_BACSU 30S ribosomal protein S8
          Length = 132

 Score =  224 bits (571), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/130 (80%), Positives = 119/130 (91%)

Query: 1   MSDPIADMLTRIRNANTVRHETVEMPASTMKKQIADILKREGFIRDAEFVEDSKQGIIRI 60
           M+DPIADMLTRIRNAN VRHE +E+PAS +K++IA+ILKREGFIRD EFVEDSKQGIIR+
Sbjct: 3   MTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREGFIRDVEFVEDSKQGIIRV 62

Query: 61  FLKYGPNQERVISGLKRISKPGLRVYTKSNEVPRVLGGLGIAIISTSKGVMTDKEARQSK 120
           FLKYG N ERVI+GLKRISKPGLRVY KSNEVPRVL GLGIAIISTS+GV+TDKEAR  +
Sbjct: 63  FLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQ 122

Query: 121 SGGEVVCYIW 130
           +GGEV+ Y+W
Sbjct: 123 AGGEVLAYVW 132


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 704,552,209
Number of extensions: 25308512
Number of successful extensions: 72177
Number of sequences better than 1.0e-05: 1851
Number of HSP's gapped: 71091
Number of HSP's successfully gapped: 1851
Length of query: 130
Length of database: 3,060,696,203
Length adjustment: 95
Effective length of query: 35
Effective length of database: 2,165,699,778
Effective search space: 75799492230
Effective search space used: 75799492230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)