BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0050.p (180 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKF3.1 B3KKF3_9BACI 50S ribosomal protein L6 331 1e-89 B1DJV8.1 B1DJV8_9BACL 50S ribosomal protein L6 313 5e-84 Q5WLP7.1 RL6_BACSK 50S ribosomal protein L6 262 8e-69 Q65P92.1 RL6_BACLD 50S ribosomal protein L6 261 2e-68 A8F9A0.1 A8F9A0_BACP2 50S ribosomal protein L6 254 2e-66 >B3KKF3.1 B3KKF3_9BACI 50S ribosomal protein L6 Length = 180 Score = 331 bits (849), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 165/180 (91%), Positives = 176/180 (97%) Query: 1 MSRIGRKPIAVPSGVDVTLNNAVITVKGPKGTLTRELHKDMKVTVENNEITVVRPSDNKL 60 MSRIGRKPIA+P+GV+VTL+NAVITVKGPKGTLTRELHKDM++TVENNEI VVRPSDNK Sbjct: 1 MSRIGRKPIAIPNGVEVTLDNAVITVKGPKGTLTRELHKDMQITVENNEINVVRPSDNKT 60 Query: 61 HRSLHGTTRSVVNNMVSGVTEGFSKSLELVGVGYRASKSGDKIVLNVGYSHPVEITPEAG 120 HRSLHGTTRSVV+NMV+GVTEGFSK+LELVGVGYRASKSGDKIVLNVGYSHPVEITPE G Sbjct: 61 HRSLHGTTRSVVSNMVNGVTEGFSKNLELVGVGYRASKSGDKIVLNVGYSHPVEITPEPG 120 Query: 121 IEFEVPANTKIIVKGIDKERVGAYAAKIRSVREPEPYKGKGIKYEGERIIRKEGKAGKKK 180 IEF+VPANTKI V+GIDKERVGAYAAKIRSVREPEPYKGKGIKYEGERIIRKEGKAGKKK Sbjct: 121 IEFDVPANTKITVRGIDKERVGAYAAKIRSVREPEPYKGKGIKYEGERIIRKEGKAGKKK 180 >B1DJV8.1 B1DJV8_9BACL 50S ribosomal protein L6 Length = 180 Score = 313 bits (801), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 155/180 (86%), Positives = 167/180 (92%) Query: 1 MSRIGRKPIAVPSGVDVTLNNAVITVKGPKGTLTRELHKDMKVTVENNEITVVRPSDNKL 60 MSRIGRKPI VP+GV + L+N VITVKGPKG+LTRE+HKDMKV V NEI + RPSDNKL Sbjct: 1 MSRIGRKPIQVPAGVSINLDNTVITVKGPKGSLTREIHKDMKVNVAENEIVIERPSDNKL 60 Query: 61 HRSLHGTTRSVVNNMVSGVTEGFSKSLELVGVGYRASKSGDKIVLNVGYSHPVEITPEAG 120 HRSLHGTTRSV+ NMVSGVTEGFSK+LELVGVGYRA+K+GDKIVLNVGYSHPVEI PEAG Sbjct: 61 HRSLHGTTRSVIANMVSGVTEGFSKNLELVGVGYRANKTGDKIVLNVGYSHPVEIAPEAG 120 Query: 121 IEFEVPANTKIIVKGIDKERVGAYAAKIRSVREPEPYKGKGIKYEGERIIRKEGKAGKKK 180 IEFEVPANTKI V+GIDKERVGA AA+IRSVREPEPYKGKGIKYEGERIIRKEGKAGKKK Sbjct: 121 IEFEVPANTKITVRGIDKERVGAVAAQIRSVREPEPYKGKGIKYEGERIIRKEGKAGKKK 180 >Q5WLP7.1 RL6_BACSK 50S ribosomal protein L6 Length = 178 Score = 262 bits (670), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 126/178 (70%), Positives = 153/178 (85%) Query: 1 MSRIGRKPIAVPSGVDVTLNNAVITVKGPKGTLTRELHKDMKVTVENNEITVVRPSDNKL 60 MSR+G+KP+ +P GV VT + + TVKGPKG L+RELH D+K+TVE NEIT RPSD+K Sbjct: 1 MSRVGKKPVIIPDGVTVTFDGNLCTVKGPKGELSRELHPDIKITVEGNEITFERPSDHKE 60 Query: 61 HRSLHGTTRSVVNNMVSGVTEGFSKSLELVGVGYRASKSGDKIVLNVGYSHPVEITPEAG 120 HR+LHGT R++VNNMV GVT+GF ++LEL GVGYRASKSG+K+VLNVGYSHPVEITPE G Sbjct: 61 HRALHGTMRALVNNMVEGVTKGFERALELNGVGYRASKSGNKLVLNVGYSHPVEITPEEG 120 Query: 121 IEFEVPANTKIIVKGIDKERVGAYAAKIRSVREPEPYKGKGIKYEGERIIRKEGKAGK 178 +E EVP+NTK++VKGI+KERVGA A+ IR+VR PEPYKGKGI+YEGE + RKEGK GK Sbjct: 121 LEIEVPSNTKVVVKGINKERVGALASNIRAVRLPEPYKGKGIRYEGEYVRRKEGKTGK 178 >Q65P92.1 RL6_BACLD 50S ribosomal protein L6 Length = 178 Score = 261 bits (666), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 125/178 (70%), Positives = 150/178 (84%) Query: 1 MSRIGRKPIAVPSGVDVTLNNAVITVKGPKGTLTRELHKDMKVTVENNEITVVRPSDNKL 60 MSR+G+K + +PSGV VTLN+ +TVKGPKG LTR H DMK+ +E+N +TV RPSDNK Sbjct: 1 MSRVGKKLLEIPSGVTVTLNDNTVTVKGPKGELTRTFHPDMKIKIEDNVLTVERPSDNKE 60 Query: 61 HRSLHGTTRSVVNNMVSGVTEGFSKSLELVGVGYRASKSGDKIVLNVGYSHPVEITPEAG 120 HR+LHGTTRS++ NMV GV++GF + LELVGVGYRASKSG+K+VLNVGYSHPVEI PE G Sbjct: 61 HRALHGTTRSIIGNMVEGVSKGFERGLELVGVGYRASKSGNKLVLNVGYSHPVEIVPENG 120 Query: 121 IEFEVPANTKIIVKGIDKERVGAYAAKIRSVREPEPYKGKGIKYEGERIIRKEGKAGK 178 IE EVP+ TK++VKG DKERVGA AA IR+VR PEPYKGKGI+YEGE + RKEGK+ K Sbjct: 121 IEIEVPSQTKVVVKGTDKERVGATAANIRAVRSPEPYKGKGIRYEGEMVRRKEGKSAK 178 >A8F9A0.1 A8F9A0_BACP2 50S ribosomal protein L6 Length = 183 Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 121/178 (67%), Positives = 151/178 (84%) Query: 1 MSRIGRKPIAVPSGVDVTLNNAVITVKGPKGTLTRELHKDMKVTVENNEITVVRPSDNKL 60 MSRIG+K I +PSGV VT N+ +TVKGPKG LTR H DM++ +E++ +TV RPSD+K Sbjct: 6 MSRIGKKLIEIPSGVTVTNNDNTVTVKGPKGELTRTFHPDMEIKIEDSVLTVSRPSDHKE 65 Query: 61 HRSLHGTTRSVVNNMVSGVTEGFSKSLELVGVGYRASKSGDKIVLNVGYSHPVEITPEAG 120 HR+LHGTTRS++ NMV GV++GF + LEL+GVGYRA+KSG+K+VLNVGYSHPVEI PEAG Sbjct: 66 HRALHGTTRSLIANMVEGVSKGFERGLELIGVGYRAAKSGNKLVLNVGYSHPVEIVPEAG 125 Query: 121 IEFEVPANTKIIVKGIDKERVGAYAAKIRSVREPEPYKGKGIKYEGERIIRKEGKAGK 178 +E EVP+ TK+++KGIDKERVGA A+ IR+VR PEPYKGKGI+YEGE + RKEGK GK Sbjct: 126 VEVEVPSQTKVVIKGIDKERVGALASNIRAVRSPEPYKGKGIRYEGEFVRRKEGKTGK 183 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.133 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,061,491,835 Number of extensions: 42374652 Number of successful extensions: 90125 Number of sequences better than 1.0e-05: 1744 Number of HSP's gapped: 89113 Number of HSP's successfully gapped: 1746 Length of query: 180 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 53 Effective length of database: 1,864,227,298 Effective search space: 98804046794 Effective search space used: 98804046794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 126 (53.1 bits)