BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0049.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKF2.1 B3KKF2_9BACI Ribosomal protein L18                           207   2e-52
B1DJV7.1 B1DJV7_9BACL Ribosomal protein L18                           198   1e-49
Q65P91.1 RL18_BACLD 50S ribosomal protein L18                         185   1e-45
C0ZIJ6.1 RL18_BREBN 50S ribosomal protein L18                         182   1e-44
P46899.1 RL18_BACSU 50S ribosomal protein L18                         179   6e-44

>B3KKF2.1 B3KKF2_9BACI Ribosomal protein L18
          Length = 122

 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/122 (82%), Positives = 112/122 (91%)

Query: 1   MITKEDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVTGVTIVSASTLD 60
           MITK+DKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDV GVT+ SASTLD
Sbjct: 1   MITKQDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVAGVTLASASTLD 60

Query: 61  KDLSATIGNGGSVEAAGKVGQLIAERAKEKGHTVVVFDRGGYLYHGRIQALADAAREAGL 120
           K+L   I NGGSVE+A KVG+L+A+RA +KG+  +VFDRGGYLYHGRIQALA+AAREAGL
Sbjct: 61  KELVNDIKNGGSVESARKVGELVAKRAADKGYKSIVFDRGGYLYHGRIQALAEAAREAGL 120

Query: 121 EF 122
           EF
Sbjct: 121 EF 122


>B1DJV7.1 B1DJV7_9BACL Ribosomal protein L18
          Length = 122

 Score =  198 bits (504), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/122 (80%), Positives = 109/122 (89%)

Query: 1   MITKEDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVTGVTIVSASTLD 60
           MITK DKNKARLKRHLRVRKKI GT  RPRL+VFRS+KHIYAQLIDDV GVT+ SAST+D
Sbjct: 1   MITKGDKNKARLKRHLRVRKKINGTVARPRLSVFRSAKHIYAQLIDDVQGVTLASASTVD 60

Query: 61  KDLSATIGNGGSVEAAGKVGQLIAERAKEKGHTVVVFDRGGYLYHGRIQALADAAREAGL 120
           K+L   IGNGGSVEAA +VGQLIA+RA+ KG + +VFDRGGYLYHGRIQALA+AAREAGL
Sbjct: 61  KELVEAIGNGGSVEAARQVGQLIAQRAQAKGVSQIVFDRGGYLYHGRIQALAEAAREAGL 120

Query: 121 EF 122
           EF
Sbjct: 121 EF 122


>Q65P91.1 RL18_BACLD 50S ribosomal protein L18
          Length = 120

 Score =  185 bits (470), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 102/122 (83%), Gaps = 2/122 (1%)

Query: 1   MITKEDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVTGVTIVSASTLD 60
           MITK  KN ARLKRH RVR K+ GT ERPRLNVFRS+KHIYAQ+IDDV GVT+VSASTLD
Sbjct: 1   MITKTSKNAARLKRHARVRAKLSGTPERPRLNVFRSNKHIYAQVIDDVNGVTLVSASTLD 60

Query: 61  KDLSATIGNGGSVEAAGKVGQLIAERAKEKGHTVVVFDRGGYLYHGRIQALADAAREAGL 120
           KD +A   NG    AA KVG+L+A+RA EKG T VVFDRGGYLYHGR++ALADAAREAGL
Sbjct: 61  KDFNAE--NGSDTAAAAKVGELVAKRASEKGITNVVFDRGGYLYHGRVKALADAAREAGL 118

Query: 121 EF 122
           EF
Sbjct: 119 EF 120


>C0ZIJ6.1 RL18_BREBN 50S ribosomal protein L18
          Length = 120

 Score =  182 bits (462), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 105/122 (86%), Gaps = 2/122 (1%)

Query: 1   MITKEDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVTGVTIVSASTLD 60
           M TK DKNKAR KRHLR+RK++ GT  RPRLNVFRSSKHIYAQLIDD TGVT+VSAS+LD
Sbjct: 1   MFTKADKNKARKKRHLRIRKRVIGTTIRPRLNVFRSSKHIYAQLIDDATGVTLVSASSLD 60

Query: 61  KDLSATIGNGGSVEAAGKVGQLIAERAKEKGHTVVVFDRGGYLYHGRIQALADAAREAGL 120
           K+L   + NG +VEAA  VG LIA+RA+EKG T V+FDRGGY+YHGRI+ALA+AAREAGL
Sbjct: 61  KELG--LNNGANVEAATAVGTLIAKRAQEKGATEVIFDRGGYIYHGRIKALAEAAREAGL 118

Query: 121 EF 122
           +F
Sbjct: 119 QF 120


>P46899.1 RL18_BACSU 50S ribosomal protein L18
          Length = 120

 Score =  179 bits (454), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 103/122 (84%), Gaps = 2/122 (1%)

Query: 1   MITKEDKNKARLKRHLRVRKKIQGTAERPRLNVFRSSKHIYAQLIDDVTGVTIVSASTLD 60
           MITK  KN ARLKRH RVR K+ GTAERPRLNVFRS+KHIYAQ+IDDV GVT+ SASTLD
Sbjct: 1   MITKTSKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLD 60

Query: 61  KDLSATIGNGGSVEAAGKVGQLIAERAKEKGHTVVVFDRGGYLYHGRIQALADAAREAGL 120
           KDL+  + + G   AA KVG+L+A+RA EKG + VVFDRGGYLYHGR++ALADAAREAGL
Sbjct: 61  KDLN--VESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYLYHGRVKALADAAREAGL 118

Query: 121 EF 122
           +F
Sbjct: 119 KF 120


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.134    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 640,306,179
Number of extensions: 22217016
Number of successful extensions: 94349
Number of sequences better than 1.0e-05: 1539
Number of HSP's gapped: 93161
Number of HSP's successfully gapped: 1539
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)