BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0048.p (165 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKF1.1 B3KKF1_9BACI Ribosomal protein S5 303 3e-81 B1DJV6.1 B1DJV6_9BACL Ribosomal protein S5 297 2e-79 C0GG97.1 C0GG97_9FIRM Ribosomal protein S5 265 1e-69 A1HQM8.1 A1HQM8_9FIRM Ribosomal protein S5 259 6e-68 Q2B2N2.1 Q2B2N2_9BACI 30S ribosomal protein S5 258 2e-67 >B3KKF1.1 B3KKF1_9BACI Ribosomal protein S5 Length = 165 Score = 303 bits (776), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 154/165 (93%), Positives = 163/165 (98%) Query: 1 LRIDPNSLELTERVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGIGKAGEVPDAIR 60 +R+DPN+LELTERVV+INRVAKVVKGGRRFSFSALVVVGDG G+VGAGIGKAGEVPDAIR Sbjct: 1 MRVDPNTLELTERVVNINRVAKVVKGGRRFSFSALVVVGDGKGWVGAGIGKAGEVPDAIR 60 Query: 61 KGIEDAKKNLIHIPIVGTSIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVG 120 KGIEDAKKNLIHIP+VGT+IPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVG Sbjct: 61 KGIEDAKKNLIHIPLVGTTIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVG 120 Query: 121 DILTKSLGSSNSMNMVNATLEGLSRLKRIEEVAKLRGKSVEELRG 165 DILTKSLGSSNSMNMVNATLEGLSRLKR+E+VAKLRGKSVEEL G Sbjct: 121 DILTKSLGSSNSMNMVNATLEGLSRLKRVEDVAKLRGKSVEELLG 165 >B1DJV6.1 B1DJV6_9BACL Ribosomal protein S5 Length = 165 Score = 297 bits (760), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 150/165 (90%), Positives = 160/165 (96%) Query: 1 LRIDPNSLELTERVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGIGKAGEVPDAIR 60 +R+DPN+LELTE+VVHINRVAKVVKGGRRFSFSALVVVGDG GYVGAGIGKAGEVPDAIR Sbjct: 1 MRVDPNTLELTEKVVHINRVAKVVKGGRRFSFSALVVVGDGKGYVGAGIGKAGEVPDAIR 60 Query: 61 KGIEDAKKNLIHIPIVGTSIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVG 120 KGIEDAKKNLIH+P+VGT+IPHLV GHFGAG VLLKPAS+GTGVIAGGPVRAVLELAGVG Sbjct: 61 KGIEDAKKNLIHVPLVGTTIPHLVVGHFGAGEVLLKPASKGTGVIAGGPVRAVLELAGVG 120 Query: 121 DILTKSLGSSNSMNMVNATLEGLSRLKRIEEVAKLRGKSVEELRG 165 DILTKSLGSSNSMNMVNATLEGLSRLKR E+VAKLRGK+VEEL G Sbjct: 121 DILTKSLGSSNSMNMVNATLEGLSRLKRAEDVAKLRGKTVEELLG 165 >C0GG97.1 C0GG97_9FIRM Ribosomal protein S5 Length = 166 Score = 265 bits (677), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 133/164 (81%), Positives = 151/164 (92%) Query: 2 RIDPNSLELTERVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGIGKAGEVPDAIRK 61 + DPN +ELTE+VV INRVAKVVKGGRRFSFSALV VGDGNG+VG G+GKAGEVP+AIRK Sbjct: 3 KFDPNKVELTEKVVKINRVAKVVKGGRRFSFSALVAVGDGNGHVGTGMGKAGEVPEAIRK 62 Query: 62 GIEDAKKNLIHIPIVGTSIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVGD 121 IEDAKKN+I +P+VGT+IPH VTG +GAGRVLLKPASEGTGVIAGGPVRAVLELAGV D Sbjct: 63 AIEDAKKNMIEVPLVGTTIPHTVTGVYGAGRVLLKPASEGTGVIAGGPVRAVLELAGVRD 122 Query: 122 ILTKSLGSSNSMNMVNATLEGLSRLKRIEEVAKLRGKSVEELRG 165 ILTKSLGS+N++N+VNAT+EGL+ LKR EEVAKLRGK+VEEL G Sbjct: 123 ILTKSLGSANAINVVNATMEGLTSLKRAEEVAKLRGKTVEELLG 166 >A1HQM8.1 A1HQM8_9FIRM Ribosomal protein S5 Length = 166 Score = 259 bits (661), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 132/164 (80%), Positives = 149/164 (90%) Query: 2 RIDPNSLELTERVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGIGKAGEVPDAIRK 61 RID ++L+L E+VV INRVAKVVKGGRRFSFSALVVVGDGNGYVGAG+GKA EVP+AIRK Sbjct: 3 RIDYSNLDLKEKVVFINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGLGKAAEVPEAIRK 62 Query: 62 GIEDAKKNLIHIPIVGTSIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVGD 121 G+EDAKKNLI +PIVGT+IPH V G FGAG+VLLKPASEGTGVIAGGPVRAVLELAG+ D Sbjct: 63 GVEDAKKNLIKVPIVGTTIPHEVIGEFGAGKVLLKPASEGTGVIAGGPVRAVLELAGIHD 122 Query: 122 ILTKSLGSSNSMNMVNATLEGLSRLKRIEEVAKLRGKSVEELRG 165 ILTKSLGSSN+ NMV AT+EGL +LKR E+VA LRGK+V+EL G Sbjct: 123 ILTKSLGSSNANNMVRATIEGLKQLKRAEDVAALRGKTVQELLG 166 >Q2B2N2.1 Q2B2N2_9BACI 30S ribosomal protein S5 Length = 166 Score = 258 bits (658), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 132/165 (80%), Positives = 145/165 (87%) Query: 1 LRIDPNSLELTERVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGAGIGKAGEVPDAIR 60 LRIDPN LEL ERVV INRVAKVVKGGRRF F+ALVVVGD NG+VG G GKA EVPDAIR Sbjct: 2 LRIDPNKLELEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGHVGFGTGKAQEVPDAIR 61 Query: 61 KGIEDAKKNLIHIPIVGTSIPHLVTGHFGAGRVLLKPASEGTGVIAGGPVRAVLELAGVG 120 K IEDAKKNLI +P+VGT+IPH + GHFGAG +LLKPASEGTGVIAGGPVRAVLELAGV Sbjct: 62 KAIEDAKKNLIEVPMVGTTIPHQIIGHFGAGEILLKPASEGTGVIAGGPVRAVLELAGVA 121 Query: 121 DILTKSLGSSNSMNMVNATLEGLSRLKRIEEVAKLRGKSVEELRG 165 DIL+KSLG++ +NMV ATLEGL+ LKR E+VAKLRGKSVEEL G Sbjct: 122 DILSKSLGTNTPINMVRATLEGLNNLKRAEDVAKLRGKSVEELLG 166 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.138 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 987,072,948 Number of extensions: 44474932 Number of successful extensions: 147515 Number of sequences better than 1.0e-05: 1959 Number of HSP's gapped: 146736 Number of HSP's successfully gapped: 1959 Length of query: 165 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 40 Effective length of database: 1,883,069,328 Effective search space: 75322773120 Effective search space used: 75322773120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)