BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0046.p (146 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKE9.1 B3KKE9_9BACI 50S ribosomal protein L15 260 3e-68 P38373.2 RL15_BACHD 50S ribosomal protein L15 239 8e-62 C4KZM7.1 C4KZM7_EXISA Ribosomal protein L15 228 9e-59 B7GJ86.1 RL15_ANOFW 50S ribosomal protein L15 227 3e-58 B1DJV4.1 B1DJV4_9BACL 50S ribosomal protein L15 226 4e-58 >B3KKE9.1 B3KKE9_9BACI 50S ribosomal protein L15 Length = 146 Score = 260 bits (665), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 127/146 (86%), Positives = 139/146 (95%) Query: 1 MKLHELAPAPGSRKERNRVGRGPSSGNGKTSGRGHKGQNSRSGGGVRPGFEGGQNPLYRR 60 MKLHEL+PAPGSRKER RVGRG SSG GKTSGRGHKGQNSRSGGGVRPGFEGGQNPLYRR Sbjct: 1 MKLHELSPAPGSRKERKRVGRGTSSGTGKTSGRGHKGQNSRSGGGVRPGFEGGQNPLYRR 60 Query: 61 LPKRGFINPTRKEYAIVNLEDLNSFAEGTEVTPQLLIETGVVKNSKSGIKILGNGELAVK 120 LPKRGF+NPTRKEYAIVN+E+LNSFA GTEVTP++L+E+G+V N+KSGIKILGNGE+ V Sbjct: 61 LPKRGFVNPTRKEYAIVNIEELNSFAAGTEVTPEVLVESGIVNNTKSGIKILGNGEVTVS 120 Query: 121 LTVQANKFSQSAVEKIEAAGGKTEVI 146 LTV+ANKFSQSAVEKIEAAGGKTEVI Sbjct: 121 LTVKANKFSQSAVEKIEAAGGKTEVI 146 >P38373.2 RL15_BACHD 50S ribosomal protein L15 Length = 146 Score = 239 bits (609), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 119/146 (81%), Positives = 131/146 (89%) Query: 1 MKLHELAPAPGSRKERNRVGRGPSSGNGKTSGRGHKGQNSRSGGGVRPGFEGGQNPLYRR 60 MKLHEL PA GSRK RNRVGRG SGNGKT+G+GHKGQN+RSGGGVRPGFEGGQNPLYRR Sbjct: 1 MKLHELKPAEGSRKVRNRVGRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQNPLYRR 60 Query: 61 LPKRGFINPTRKEYAIVNLEDLNSFAEGTEVTPQLLIETGVVKNSKSGIKILGNGELAVK 120 LPKRGF NPTRKE+A+VNLE LN F +GTEV+P+LL+ETGVV N+K GIKILGNG+L K Sbjct: 61 LPKRGFTNPTRKEFAVVNLEKLNRFEDGTEVSPELLLETGVVSNAKDGIKILGNGKLEKK 120 Query: 121 LTVQANKFSQSAVEKIEAAGGKTEVI 146 LTV+ANKFS SAVE IEAAGGKTEVI Sbjct: 121 LTVKANKFSASAVEAIEAAGGKTEVI 146 >C4KZM7.1 C4KZM7_EXISA Ribosomal protein L15 Length = 146 Score = 228 bits (582), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 113/146 (77%), Positives = 126/146 (86%) Query: 1 MKLHELAPAPGSRKERNRVGRGPSSGNGKTSGRGHKGQNSRSGGGVRPGFEGGQNPLYRR 60 MKLHEL P PGSR ERNRVGRG ++GNGKTSGRGHKGQ +RSGGGVRPGFEGGQNPLYRR Sbjct: 1 MKLHELKPTPGSRHERNRVGRGMATGNGKTSGRGHKGQKARSGGGVRPGFEGGQNPLYRR 60 Query: 61 LPKRGFINPTRKEYAIVNLEDLNSFAEGTEVTPQLLIETGVVKNSKSGIKILGNGELAVK 120 LPKRGF NPTRKEYA+V+L+ LN F GTEVTP+LLIETGVV ++K GIK+L NG+L K Sbjct: 61 LPKRGFNNPTRKEYAVVSLDTLNRFEAGTEVTPELLIETGVVSSAKDGIKVLANGKLETK 120 Query: 121 LTVQANKFSQSAVEKIEAAGGKTEVI 146 LTV+ANKFS +A E IEAAGG EVI Sbjct: 121 LTVKANKFSGAAKEAIEAAGGTVEVI 146 >B7GJ86.1 RL15_ANOFW 50S ribosomal protein L15 Length = 146 Score = 227 bits (578), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 115/146 (78%), Positives = 126/146 (86%) Query: 1 MKLHELAPAPGSRKERNRVGRGPSSGNGKTSGRGHKGQNSRSGGGVRPGFEGGQNPLYRR 60 MKLHEL PAPGSRKERNRVGRG SGNGKTSG+GHKGQN+RSGGGVR GFEGGQ PL+RR Sbjct: 1 MKLHELQPAPGSRKERNRVGRGIGSGNGKTSGKGHKGQNARSGGGVRIGFEGGQTPLFRR 60 Query: 61 LPKRGFINPTRKEYAIVNLEDLNSFAEGTEVTPQLLIETGVVKNSKSGIKILGNGELAVK 120 LPKRGF N RKEYAIVNLE LN F +GTEVTP+LL+ETGVV K+GIK+LG+GEL K Sbjct: 61 LPKRGFTNIHRKEYAIVNLEALNRFEDGTEVTPELLLETGVVSKLKAGIKVLGDGELTKK 120 Query: 121 LTVQANKFSQSAVEKIEAAGGKTEVI 146 LTV+A+KFS SA E IEAAGG TEVI Sbjct: 121 LTVKAHKFSASAKEAIEAAGGTTEVI 146 >B1DJV4.1 B1DJV4_9BACL 50S ribosomal protein L15 Length = 146 Score = 226 bits (577), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 113/146 (77%), Positives = 129/146 (88%) Query: 1 MKLHELAPAPGSRKERNRVGRGPSSGNGKTSGRGHKGQNSRSGGGVRPGFEGGQNPLYRR 60 MKLHELAPAPGS + R GRG SGNGKTSG+GHKGQN+RSGGGVRPGFEGGQNPLYRR Sbjct: 1 MKLHELAPAPGSTQVAKRKGRGIGSGNGKTSGKGHKGQNARSGGGVRPGFEGGQNPLYRR 60 Query: 61 LPKRGFINPTRKEYAIVNLEDLNSFAEGTEVTPQLLIETGVVKNSKSGIKILGNGELAVK 120 LPKRGF N R EYAIVN+E+LN FA G+EVTP++L+E G++KN +GIKILGNGE+ V+ Sbjct: 61 LPKRGFNNRFRTEYAIVNIEELNKFAAGSEVTPEVLLEQGIIKNPLAGIKILGNGEVKVQ 120 Query: 121 LTVQANKFSQSAVEKIEAAGGKTEVI 146 LTV+ANKFSQSAVEKI+AAGGKTEVI Sbjct: 121 LTVKANKFSQSAVEKIQAAGGKTEVI 146 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 948,319,273 Number of extensions: 43212397 Number of successful extensions: 192561 Number of sequences better than 1.0e-05: 1615 Number of HSP's gapped: 190610 Number of HSP's successfully gapped: 1615 Length of query: 146 Length of database: 3,060,696,203 Length adjustment: 109 Effective length of query: 37 Effective length of database: 2,033,805,568 Effective search space: 75250806016 Effective search space used: 75250806016 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 125 (52.8 bits)