BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0042.p
         (105 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLM1.1 B3KLM1_9BACI KOW domain protein                              121   2e-26
B1DJU9.1 B1DJU9_9BACL Putative uncharacterized protein                120   5e-26
O50629.1 O50629_BACHD C-125 initiation factor IF-I, RNA polymera...   111   2e-23
Q9KGD7.1 Q9KGD7_BACHD BH0157 protein                                  111   2e-23
Q65P84.1 Q65P84_BACLD Putative uncharacterized protein                101   2e-20

>B3KLM1.1 B3KLM1_9BACI KOW domain protein
          Length = 103

 Score =  121 bits (304), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 81/102 (79%), Gaps = 1/102 (0%)

Query: 4   MNIGSSPQIGQIVRILKGKDAGEAAVVIAVVDSRFVYIADGDKRKFDAPKKKNIQHLELI 63
           +N   + Q GQIV+ILKG+DAG+ AV++++ DSRFV+IADGDKRKFD  KKKN+ HLE  
Sbjct: 3   LNHEITLQPGQIVKILKGRDAGQYAVIVSIEDSRFVWIADGDKRKFDGAKKKNVLHLEPQ 62

Query: 64  PFICSEIVDSLEETGRVTNGKLRFAVMKYGKPAGKSANEKGD 105
            +I SE+V+SL+E+GRVTNGKLRFA+ ++     K A++KGD
Sbjct: 63  SYISSEVVNSLQESGRVTNGKLRFALGQFVSDKSK-ADQKGD 103


>B1DJU9.1 B1DJU9_9BACL Putative uncharacterized protein
          Length = 93

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 66/90 (73%)

Query: 9  SPQIGQIVRILKGKDAGEAAVVIAVVDSRFVYIADGDKRKFDAPKKKNIQHLELIPFICS 68
           PQIGQIV++L+GKD    AV+I +VD RFV I DGDKR+FD PKKKN+ HLEL P I S
Sbjct: 4  QPQIGQIVKVLRGKDENSYAVIIEIVDERFVLIVDGDKRRFDQPKKKNVLHLELQPAISS 63

Query: 69 EIVDSLEETGRVTNGKLRFAVMKYGKPAGK 98
          E+  SL ETGRVTN KLR+ + KY    G+
Sbjct: 64 EVTSSLLETGRVTNAKLRYVIQKYAHAKGE 93


>O50629.1 O50629_BACHD C-125 initiation factor IF-I, RNA polymerase alpha
          subunit and ribosomal proteins, partial and complete
          cds
          Length = 105

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%)

Query: 7  GSSPQIGQIVRILKGKDAGEAAVVIAVVDSRFVYIADGDKRKFDAPKKKNIQHLELIPFI 66
          G SP+IGQIV+I+KG+D  + +V+I  VD RFVYIADGDKRK D  K+KN+ HL+LI  I
Sbjct: 8  GPSPEIGQIVKIVKGRDRDQFSVIIKRVDDRFVYIADGDKRKVDRAKRKNMNHLKLIDHI 67

Query: 67 CSEIVDSLEETGRVTNGKLRFAVMKY 92
            E+  S EETG+VTNGKLRFA+ K+
Sbjct: 68 SPEVRHSFEETGKVTNGKLRFALKKF 93


>Q9KGD7.1 Q9KGD7_BACHD BH0157 protein
          Length = 102

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%)

Query: 7  GSSPQIGQIVRILKGKDAGEAAVVIAVVDSRFVYIADGDKRKFDAPKKKNIQHLELIPFI 66
          G SP+IGQIV+I+KG+D  + +V+I  VD RFVYIADGDKRK D  K+KN+ HL+LI  I
Sbjct: 5  GPSPEIGQIVKIVKGRDRDQFSVIIKRVDDRFVYIADGDKRKVDRAKRKNMNHLKLIDHI 64

Query: 67 CSEIVDSLEETGRVTNGKLRFAVMKY 92
            E+  S EETG+VTNGKLRFA+ K+
Sbjct: 65 SPEVRHSFEETGKVTNGKLRFALKKF 90


>Q65P84.1 Q65P84_BACLD Putative uncharacterized protein
          Length = 109

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 63/84 (75%)

Query: 9  SPQIGQIVRILKGKDAGEAAVVIAVVDSRFVYIADGDKRKFDAPKKKNIQHLELIPFICS 68
          +P+IGQ VR+ +G++  + AVVI +VD   V +ADG+KRKF +PKKKNI HL     +  
Sbjct: 5  TPEIGQFVRMTRGREMNQYAVVIDIVDHHHVLVADGEKRKFHSPKKKNINHLTFYDCVSP 64

Query: 69 EIVDSLEETGRVTNGKLRFAVMKY 92
          E+ +S+ ETGRVTNGKLRF+++K+
Sbjct: 65 EVQNSINETGRVTNGKLRFSLLKF 88


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 616,299,678
Number of extensions: 22994999
Number of successful extensions: 49497
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 49520
Number of HSP's successfully gapped: 40
Length of query: 105
Length of database: 3,060,696,203
Length adjustment: 73
Effective length of query: 32
Effective length of database: 2,372,962,108
Effective search space: 75934787456
Effective search space used: 75934787456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)