BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0041.p
         (71 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLM2.1 B3KLM2_9BACI Translation initiation factor IF-1              143   6e-33
B1DJU8.1 B1DJU8_9BACL Translation initiation factor IF-1              140   3e-32
O50630.3 IF1_BACHD Translation initiation factor IF-1                 129   1e-28
B1YGX3.1 B1YGX3_EXIS2 Translation initiation factor IF-1              127   3e-28
C0ZIK3.1 C0ZIK3_BREBN Translation initiation factor IF-1              127   5e-28

>B3KLM2.1 B3KLM2_9BACI Translation initiation factor IF-1
          Length = 71

 Score =  143 bits (360), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/71 (97%), Positives = 71/71 (100%)

Query: 1  VAKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY 60
          +AKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY
Sbjct: 1  MAKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY 60

Query: 61 DLSKGRITYRK 71
          DL+KGRITYRK
Sbjct: 61 DLTKGRITYRK 71


>B1DJU8.1 B1DJU8_9BACL Translation initiation factor IF-1
          Length = 71

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 70/71 (98%)

Query: 1  VAKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY 60
          +AKEDVIEVEGTVIEPLPNA FKVELENGHQILAHVSGKLRMHFIRILTGDKVV+QLSPY
Sbjct: 1  MAKEDVIEVEGTVIEPLPNAMFKVELENGHQILAHVSGKLRMHFIRILTGDKVVIQLSPY 60

Query: 61 DLSKGRITYRK 71
          DLS+GRITYRK
Sbjct: 61 DLSRGRITYRK 71


>O50630.3 IF1_BACHD Translation initiation factor IF-1
          Length = 72

 Score =  129 bits (323), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 67/70 (95%)

Query: 1  VAKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY 60
          +AKEDVIEVEGTVIEPLPNA F+VELENGH+ILAHVSGK+RMHFIRIL GDKV V+LSPY
Sbjct: 1  MAKEDVIEVEGTVIEPLPNAMFRVELENGHKILAHVSGKIRMHFIRILPGDKVTVELSPY 60

Query: 61 DLSKGRITYR 70
          DL++GRITYR
Sbjct: 61 DLTRGRITYR 70


>B1YGX3.1 B1YGX3_EXIS2 Translation initiation factor IF-1
          Length = 72

 Score =  127 bits (319), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 66/70 (94%)

Query: 1  VAKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY 60
          +AK+DVIEVEGTVIEPLPNA FKVELENGH +LAHVSGK+RMHFIRIL GDKV V+LSPY
Sbjct: 1  MAKQDVIEVEGTVIEPLPNAMFKVELENGHTVLAHVSGKIRMHFIRILPGDKVTVELSPY 60

Query: 61 DLSKGRITYR 70
          DL++GRITYR
Sbjct: 61 DLTRGRITYR 70


>C0ZIK3.1 C0ZIK3_BREBN Translation initiation factor IF-1
          Length = 72

 Score =  127 bits (318), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 67/70 (95%)

Query: 1  VAKEDVIEVEGTVIEPLPNATFKVELENGHQILAHVSGKLRMHFIRILTGDKVVVQLSPY 60
          +AK+DVIEVEGTVIEPLPNA F+VELENGH++LAHVSGK+RMHFIRIL GDKV V+LSPY
Sbjct: 1  MAKDDVIEVEGTVIEPLPNAMFRVELENGHKVLAHVSGKIRMHFIRILPGDKVTVELSPY 60

Query: 61 DLSKGRITYR 70
          DL++GRITYR
Sbjct: 61 DLTRGRITYR 70


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.139    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 416,801,994
Number of extensions: 13405769
Number of successful extensions: 33740
Number of sequences better than 1.0e-05: 1828
Number of HSP's gapped: 33729
Number of HSP's successfully gapped: 1828
Length of query: 71
Length of database: 3,060,696,203
Length adjustment: 42
Effective length of query: 29
Effective length of database: 2,665,013,573
Effective search space: 77285393617
Effective search space used: 77285393617
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)