BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0040.p
         (37 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A8W1C1.1 A8W1C1_9BACI 50S ribosomal protein L36                        75   1e-12
O50631.1 RL36_BACHD 50S ribosomal protein L36                          74   4e-12
C0ZIK4.1 RL36_BREBN 50S ribosomal protein L36                          72   2e-11
Q5WLN8.1 RL36_BACSK 50S ribosomal protein L36                          72   2e-11
C3KVM6.1 C3KVM6_CLOB6 50S ribosomal protein L36                        71   2e-11

>A8W1C1.1 A8W1C1_9BACI 50S ribosomal protein L36
          Length = 63

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 1  MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG 37
          MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG
Sbjct: 27 MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG 63


>O50631.1 RL36_BACHD 50S ribosomal protein L36
          Length = 37

 Score = 73.9 bits (180), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 1  MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG 37
          MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG
Sbjct: 1  MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG 37


>C0ZIK4.1 RL36_BREBN 50S ribosomal protein L36
          Length = 37

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/37 (97%), Positives = 36/37 (97%)

Query: 1  MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG 37
          MKVRPSVKPICEKCKVIRRKG VMVICENPKHKQKQG
Sbjct: 1  MKVRPSVKPICEKCKVIRRKGNVMVICENPKHKQKQG 37


>Q5WLN8.1 RL36_BACSK 50S ribosomal protein L36
          Length = 37

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/37 (97%), Positives = 36/37 (97%)

Query: 1  MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG 37
          MKVRPSVKPICEKCKVIRRKG VMVICENPKHKQKQG
Sbjct: 1  MKVRPSVKPICEKCKVIRRKGNVMVICENPKHKQKQG 37


>C3KVM6.1 C3KVM6_CLOB6 50S ribosomal protein L36
          Length = 37

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/37 (97%), Positives = 36/37 (97%)

Query: 1  MKVRPSVKPICEKCKVIRRKGTVMVICENPKHKQKQG 37
          MKVRPSVKPICEKCKVIRRKG VMVICENPKHKQKQG
Sbjct: 1  MKVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG 37


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 197,886,907
Number of extensions: 3537844
Number of successful extensions: 11082
Number of sequences better than 1.0e-05: 954
Number of HSP's gapped: 11015
Number of HSP's successfully gapped: 954
Length of query: 37
Length of database: 3,060,696,203
Length adjustment: 11
Effective length of query: 26
Effective length of database: 2,957,065,038
Effective search space: 76883690988
Effective search space used: 76883690988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)