BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0038.p
         (131 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DJU6.1 B1DJU6_9BACL Ribosomal protein S11                           194   2e-48
Q5WLN6.1 RS11_BACSK 30S ribosomal protein S11                         192   6e-48
O50633.1 RS11_BACHD 30S ribosomal protein S11                         187   2e-46
A8W1B8.1 A8W1B8_9BACI Ribosomal 5S rRNA E-loop binding protein C...   187   3e-46
C1TIM9.1 C1TIM9_9FIRM SSU ribosomal protein S11P                      187   3e-46

>B1DJU6.1 B1DJU6_9BACL Ribosomal protein S11
          Length = 131

 Score =  194 bits (493), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/115 (86%), Positives = 100/115 (86%)

Query: 17  NIESGVAHIRSTFNNTIVTITDPHGNAISWASSGGQGFKGSRKSTPFXXXXXXXXXXXXX 76
           NIESGVAHIRSTFNNTIVTITDPHGNAISWASSG  GFKGSRKSTPF             
Sbjct: 17  NIESGVAHIRSTFNNTIVTITDPHGNAISWASSGNLGFKGSRKSTPFAAQMAAEAAAKAA 76

Query: 77  MEHGMKSVEVMVKGPGAGREAAIRSLQAAGLEVNLIKDVTPVPHNGCRPPKRRRV 131
           MEHGMK+VEVMVKGPGAGREAAIRSLQAAGLEVNLIKDVTPVPHNGCRPPKRRRV
Sbjct: 77  MEHGMKAVEVMVKGPGAGREAAIRSLQAAGLEVNLIKDVTPVPHNGCRPPKRRRV 131


>Q5WLN6.1 RS11_BACSK 30S ribosomal protein S11
          Length = 133

 Score =  192 bits (489), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 93/115 (80%), Positives = 98/115 (85%)

Query: 17  NIESGVAHIRSTFNNTIVTITDPHGNAISWASSGGQGFKGSRKSTPFXXXXXXXXXXXXX 76
           NI+SGVAHIRSTFNNTIVTITDPHGNAISWAS+G  GFKGSRKSTPF             
Sbjct: 19  NIDSGVAHIRSTFNNTIVTITDPHGNAISWASAGALGFKGSRKSTPFAAQMAAESAAKTA 78

Query: 77  MEHGMKSVEVMVKGPGAGREAAIRSLQAAGLEVNLIKDVTPVPHNGCRPPKRRRV 131
           MEHGMK++EV VKGPGAGREAAIRSLQA GLEVN+IKDVTPVPHNGCRPPKRRRV
Sbjct: 79  MEHGMKTIEVSVKGPGAGREAAIRSLQAVGLEVNMIKDVTPVPHNGCRPPKRRRV 133


>O50633.1 RS11_BACHD 30S ribosomal protein S11
          Length = 129

 Score =  187 bits (475), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/115 (80%), Positives = 98/115 (85%)

Query: 17  NIESGVAHIRSTFNNTIVTITDPHGNAISWASSGGQGFKGSRKSTPFXXXXXXXXXXXXX 76
           N+E+GVAHIRSTFNNTIVTITDPHGNAISWAS+G  GFKGSRKSTPF             
Sbjct: 15  NVETGVAHIRSTFNNTIVTITDPHGNAISWASAGALGFKGSRKSTPFAAQMAAETAAKAA 74

Query: 77  MEHGMKSVEVMVKGPGAGREAAIRSLQAAGLEVNLIKDVTPVPHNGCRPPKRRRV 131
           MEHGMKS+EV VKGPGAGREAAIRSLQA GLEVN+IKDVTPVPHNGCRPPKRRRV
Sbjct: 75  MEHGMKSIEVSVKGPGAGREAAIRSLQAVGLEVNMIKDVTPVPHNGCRPPKRRRV 129


>A8W1B8.1 A8W1B8_9BACI Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
          Length = 130

 Score =  187 bits (475), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/115 (80%), Positives = 96/115 (83%)

Query: 17  NIESGVAHIRSTFNNTIVTITDPHGNAISWASSGGQGFKGSRKSTPFXXXXXXXXXXXXX 76
           NIESGVAHIRSTFNNTIVTITD  GNAISWAS+G  GFKGSRKSTPF             
Sbjct: 16  NIESGVAHIRSTFNNTIVTITDTQGNAISWASAGALGFKGSRKSTPFAAQTAAETAAKAA 75

Query: 77  MEHGMKSVEVMVKGPGAGREAAIRSLQAAGLEVNLIKDVTPVPHNGCRPPKRRRV 131
           MEHGMK+V V VKGPGAGREAAIRSLQAAGLEVN+IKDVTPVPHNGCRPPKRRRV
Sbjct: 76  MEHGMKTVVVSVKGPGAGREAAIRSLQAAGLEVNMIKDVTPVPHNGCRPPKRRRV 130


>C1TIM9.1 C1TIM9_9FIRM SSU ribosomal protein S11P
          Length = 129

 Score =  187 bits (475), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 96/115 (83%)

Query: 17  NIESGVAHIRSTFNNTIVTITDPHGNAISWASSGGQGFKGSRKSTPFXXXXXXXXXXXXX 76
           NIE GVAHI+STFNNTIVTI D  GNAISWAS+GG GFKGSRKSTPF             
Sbjct: 15  NIEQGVAHIKSTFNNTIVTIADIKGNAISWASAGGVGFKGSRKSTPFAAQLAAETAAKAA 74

Query: 77  MEHGMKSVEVMVKGPGAGREAAIRSLQAAGLEVNLIKDVTPVPHNGCRPPKRRRV 131
           MEHG+K VEVMVKGPGAGREAAIRSLQAAGLEVNLIKDVTP+PHNGCRPPKRRRV
Sbjct: 75  MEHGLKEVEVMVKGPGAGREAAIRSLQAAGLEVNLIKDVTPIPHNGCRPPKRRRV 129


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 654,095,074
Number of extensions: 20232055
Number of successful extensions: 52904
Number of sequences better than 1.0e-05: 2107
Number of HSP's gapped: 52433
Number of HSP's successfully gapped: 2107
Length of query: 131
Length of database: 3,060,696,203
Length adjustment: 96
Effective length of query: 35
Effective length of database: 2,156,278,763
Effective search space: 75469756705
Effective search space used: 75469756705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)