BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0036.p
         (121 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLM6.1 B3KLM6_9BACI 50S ribosomal protein L17                       234   1e-60
B1DJU4.1 B1DJU4_9BACL 50S ribosomal protein L17                       226   5e-58
O50635.2 RL17_BACHD 50S ribosomal protein L17                         179   1e-43
B7GJ95.1 RL17_ANOFW 50S ribosomal protein L17                         177   3e-43
C0ZIK8.1 RL17_BREBN 50S ribosomal protein L17                         176   7e-43

>B3KLM6.1 B3KLM6_9BACI 50S ribosomal protein L17
          Length = 121

 Score =  234 bits (598), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/121 (95%), Positives = 120/121 (99%)

Query: 1   MAYQKLGRDSSARKALFRDMVTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARR 60
           MAYQKLGRDSSARKALFRD+VTDLFLYERIQTTEAKAKEVRSIAE+LITKAKKGDLHARR
Sbjct: 1   MAYQKLGRDSSARKALFRDLVTDLFLYERIQTTEAKAKEVRSIAERLITKAKKGDLHARR 60

Query: 61  QVAAFVRRETVDGEQDAIQKLFADIAPRYTERPGGYTRILKLGPRRGDAAPMVYLELVDR 120
           QVAAFVRRETVDGEQDAIQKLF++IAPRY ERPGGYTRILKLGPRRGDAAPMVYLELVDR
Sbjct: 61  QVAAFVRRETVDGEQDAIQKLFSEIAPRYVERPGGYTRILKLGPRRGDAAPMVYLELVDR 120

Query: 121 A 121
           A
Sbjct: 121 A 121


>B1DJU4.1 B1DJU4_9BACL 50S ribosomal protein L17
          Length = 121

 Score =  226 bits (576), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 111/121 (91%), Positives = 119/121 (98%)

Query: 1   MAYQKLGRDSSARKALFRDMVTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARR 60
           MAYQKLGRD+SARKALFRD+VTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARR
Sbjct: 1   MAYQKLGRDASARKALFRDLVTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARR 60

Query: 61  QVAAFVRRETVDGEQDAIQKLFADIAPRYTERPGGYTRILKLGPRRGDAAPMVYLELVDR 120
           QVAA+VRRETV+GEQDAIQKLF+++A RY+ER GGYTRILKLGPRRGDAAPMVYLELVDR
Sbjct: 61  QVAAYVRRETVNGEQDAIQKLFSELATRYSERAGGYTRILKLGPRRGDAAPMVYLELVDR 120

Query: 121 A 121
           A
Sbjct: 121 A 121


>O50635.2 RL17_BACHD 50S ribosomal protein L17
          Length = 120

 Score =  179 bits (453), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 101/120 (84%), Gaps = 2/120 (1%)

Query: 1   MAYQKLGRDSSARKALFRDMVTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARR 60
           MAY KLGRDS+ARKAL RD+ TDL + ERI+TTEAKAKE+RS+ EK+IT  K+GDLHARR
Sbjct: 1   MAYAKLGRDSAARKALLRDLATDLIINERIETTEAKAKELRSVVEKMITLGKRGDLHARR 60

Query: 61  QVAAFVRRETVDGE--QDAIQKLFADIAPRYTERPGGYTRILKLGPRRGDAAPMVYLELV 118
           Q AAF+RRE  D E  QDAIQKLF+DIAPRY +R GGYTR+LK+GPRRGD APM  +ELV
Sbjct: 61  QAAAFIRREVADEETGQDAIQKLFSDIAPRYEDRQGGYTRVLKVGPRRGDGAPMAIIELV 120


>B7GJ95.1 RL17_ANOFW 50S ribosomal protein L17
          Length = 120

 Score =  177 bits (449), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 102/120 (85%), Gaps = 2/120 (1%)

Query: 1   MAYQKLGRDSSARKALFRDMVTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARR 60
           M+Y+KLGR SS RKAL RD+VTDL + ERI+TTEA+AKE+RS+ EK+IT  K+GDLHARR
Sbjct: 1   MSYRKLGRTSSQRKALLRDLVTDLIINERIETTEARAKELRSVVEKMITLGKRGDLHARR 60

Query: 61  QVAAFVRRETVDGE--QDAIQKLFADIAPRYTERPGGYTRILKLGPRRGDAAPMVYLELV 118
           Q AAFVR+E  + E  QDAIQKLF+DIAPRY +R GGYTRI+KLGPRRGD APMV +ELV
Sbjct: 61  QAAAFVRKEVANTETGQDAIQKLFSDIAPRYQDRQGGYTRIMKLGPRRGDGAPMVIIELV 120


>C0ZIK8.1 RL17_BREBN 50S ribosomal protein L17
          Length = 119

 Score =  176 bits (445), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 102/119 (85%), Gaps = 1/119 (0%)

Query: 1   MAYQKLGRDSSARKALFRDMVTDLFLYERIQTTEAKAKEVRSIAEKLITKAKKGDLHARR 60
           MA +KLGR SSARKALFRD+VTDL + ERI+TTE KAKE+R IAEK+IT AK+GDLHARR
Sbjct: 1   MAQRKLGRRSSARKALFRDLVTDLIINERIETTEMKAKELRPIAEKMITLAKRGDLHARR 60

Query: 61  QVAAFVRRETVDGE-QDAIQKLFADIAPRYTERPGGYTRILKLGPRRGDAAPMVYLELV 118
           QVAAFVR+E  + E +DA+QKLF +IAPR+ ER GGYTRILK GPRRGDAAPM Y+E V
Sbjct: 61  QVAAFVRKEVANAEGRDAVQKLFDEIAPRFKERNGGYTRILKAGPRRGDAAPMAYIEFV 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 624,541,648
Number of extensions: 21275831
Number of successful extensions: 56800
Number of sequences better than 1.0e-05: 1632
Number of HSP's gapped: 55223
Number of HSP's successfully gapped: 1664
Length of query: 121
Length of database: 3,060,696,203
Length adjustment: 87
Effective length of query: 34
Effective length of database: 2,241,067,898
Effective search space: 76196308532
Effective search space used: 76196308532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)