BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0033.p (145 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLM8.1 B3KLM8_9BACI Ribosomal protein L13 261 1e-68 B1DJU2.1 B1DJU2_9BACL Ribosomal protein L13 243 6e-63 Q9KGD5.1 RL13_BACHD 50S ribosomal protein L13 215 1e-54 C5D3V0.1 C5D3V0_9BACI Ribosomal protein L13 213 3e-54 B4BSP1.1 B4BSP1_9BACI 50S ribosomal protein L13 212 8e-54 >B3KLM8.1 B3KLM8_9BACI Ribosomal protein L13 Length = 145 Score = 261 bits (668), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 123/145 (84%), Positives = 133/145 (91%) Query: 1 MRTTYMAKPNEVERNWHIIDAEGKTLGRLASEAAALIRGKHKPQFTPHVDTGDFVIVINA 60 MRTTYMAKPNEVER W+I+DAEGKTLGRLASE AALIRGKHKPQFTPHVDTGDFV+VINA Sbjct: 1 MRTTYMAKPNEVERKWYIVDAEGKTLGRLASEVAALIRGKHKPQFTPHVDTGDFVVVINA 60 Query: 61 EKIHLTGKKLQNKKYYRHSMHPGGLKVTVAEDLLKTKPERVIESAVHGMIPKTRQGDHMK 120 EKIHLTGKK++NKKYYRHS+HPGGLKVT A+DL+ PERVIESAVHGM+PKTR G+ MK Sbjct: 61 EKIHLTGKKMENKKYYRHSLHPGGLKVTSAQDLIAKFPERVIESAVHGMLPKTRMGEKMK 120 Query: 121 LRLKVYAGAEHPHAAQKPEVYELRG 145 LRLK YAG HPH AQKPEVYELRG Sbjct: 121 LRLKAYAGTAHPHEAQKPEVYELRG 145 >B1DJU2.1 B1DJU2_9BACL Ribosomal protein L13 Length = 145 Score = 243 bits (619), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 116/145 (80%), Positives = 128/145 (88%) Query: 1 MRTTYMAKPNEVERNWHIIDAEGKTLGRLASEAAALIRGKHKPQFTPHVDTGDFVIVINA 60 MRTTYMAKPNEVER WHIIDA GKTLGRLA+EAA+LIRGKHKPQFTPHVDTGDFVIVINA Sbjct: 1 MRTTYMAKPNEVERKWHIIDAAGKTLGRLATEAASLIRGKHKPQFTPHVDTGDFVIVINA 60 Query: 61 EKIHLTGKKLQNKKYYRHSMHPGGLKVTVAEDLLKTKPERVIESAVHGMIPKTRQGDHMK 120 +KI LTGKK+QNK YYRHS + GGLKVT A +++ K +R IE AVHGM+PKTRQG+ MK Sbjct: 61 DKIVLTGKKMQNKMYYRHSGYSGGLKVTPAHEMIAKKADRAIELAVHGMLPKTRQGNAMK 120 Query: 121 LRLKVYAGAEHPHAAQKPEVYELRG 145 LRLK YAG+EHPH AQ PEVYELRG Sbjct: 121 LRLKAYAGSEHPHQAQNPEVYELRG 145 >Q9KGD5.1 RL13_BACHD 50S ribosomal protein L13 Length = 145 Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 101/145 (69%), Positives = 120/145 (82%) Query: 1 MRTTYMAKPNEVERNWHIIDAEGKTLGRLASEAAALIRGKHKPQFTPHVDTGDFVIVINA 60 MRTTYMAKPNEVER W+++DAEG+TLGRLASE A+++RGKHKP +TPHVDTGD VI+INA Sbjct: 1 MRTTYMAKPNEVERKWYVVDAEGQTLGRLASEVASILRGKHKPTYTPHVDTGDHVIIINA 60 Query: 61 EKIHLTGKKLQNKKYYRHSMHPGGLKVTVAEDLLKTKPERVIESAVHGMIPKTRQGDHMK 120 EKIHLTG KLQ+K YYRHS HPGGLK T A D+ KPE+++E A+ GM+PK G Sbjct: 61 EKIHLTGNKLQDKIYYRHSGHPGGLKETRAADMRANKPEKMLELAIKGMLPKNTLGRKQG 120 Query: 121 LRLKVYAGAEHPHAAQKPEVYELRG 145 ++L VYAG+EH H AQKPEVYELRG Sbjct: 121 MKLHVYAGSEHKHQAQKPEVYELRG 145 >C5D3V0.1 C5D3V0_9BACI Ribosomal protein L13 Length = 145 Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 101/145 (69%), Positives = 117/145 (80%) Query: 1 MRTTYMAKPNEVERNWHIIDAEGKTLGRLASEAAALIRGKHKPQFTPHVDTGDFVIVINA 60 MRTTYMAKPNEVER W+++DA GKTLGRLASE AA++RGKHKP FTPHVD GD VI+INA Sbjct: 1 MRTTYMAKPNEVERKWYVVDAAGKTLGRLASEVAAILRGKHKPTFTPHVDCGDHVIIINA 60 Query: 61 EKIHLTGKKLQNKKYYRHSMHPGGLKVTVAEDLLKTKPERVIESAVHGMIPKTRQGDHMK 120 EKI LTGKKL K YYRHS+HPGGLKV A ++ PE+++E A+ GM+PK R G M Sbjct: 61 EKIELTGKKLTKKLYYRHSLHPGGLKVRTALEMRTNYPEQMLERAIRGMLPKGRLGRQMF 120 Query: 121 LRLKVYAGAEHPHAAQKPEVYELRG 145 +L VY G+EHPH AQKPEVYELRG Sbjct: 121 KKLHVYRGSEHPHQAQKPEVYELRG 145 >B4BSP1.1 B4BSP1_9BACI 50S ribosomal protein L13 Length = 145 Score = 212 bits (540), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 102/145 (70%), Positives = 116/145 (80%) Query: 1 MRTTYMAKPNEVERNWHIIDAEGKTLGRLASEAAALIRGKHKPQFTPHVDTGDFVIVINA 60 MRTTYMAKPNEVER W+++DA GKTLGRLASE AAL+RGKHKP FTPHVD GD VIVINA Sbjct: 1 MRTTYMAKPNEVERKWYVVDAAGKTLGRLASEVAALLRGKHKPTFTPHVDCGDHVIVINA 60 Query: 61 EKIHLTGKKLQNKKYYRHSMHPGGLKVTVAEDLLKTKPERVIESAVHGMIPKTRQGDHMK 120 +K+ LTGKKL K YYRHS+HPGGLKV A ++ PE++IE AV GM+PK G M Sbjct: 61 DKVELTGKKLTKKLYYRHSLHPGGLKVRTALEMRTNYPEQMIERAVRGMLPKGSLGRQMF 120 Query: 121 LRLKVYAGAEHPHAAQKPEVYELRG 145 +L VY G+EHPH AQKPEVYELRG Sbjct: 121 KKLHVYRGSEHPHQAQKPEVYELRG 145 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 880,875,076 Number of extensions: 33524004 Number of successful extensions: 74345 Number of sequences better than 1.0e-05: 1648 Number of HSP's gapped: 74138 Number of HSP's successfully gapped: 1648 Length of query: 145 Length of database: 3,060,696,203 Length adjustment: 108 Effective length of query: 37 Effective length of database: 2,043,226,583 Effective search space: 75599383571 Effective search space used: 75599383571 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)