BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0032.p
         (130 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLM9.1 B3KLM9_9BACI 30S ribosomal protein S9                        243   4e-63
B1DJU1.1 B1DJU1_9BACL 30S ribosomal protein S9                        235   8e-61
Q9KGD4.1 RS9_BACHD 30S ribosomal protein S9                           214   3e-54
C0ZIL4.1 RS9_BREBN 30S ribosomal protein S9                           213   5e-54
Q5WLM8.1 RS9_BACSK 30S ribosomal protein S9                           210   3e-53

>B3KLM9.1 B3KLM9_9BACI 30S ribosomal protein S9
          Length = 130

 Score =  243 bits (620), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 117/130 (90%), Positives = 127/130 (97%)

Query: 1   MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGN 60
           MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKR+++EYFG+ETLK+IVKQPLNLTETLG 
Sbjct: 1   MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKRDINEYFGLETLKLIVKQPLNLTETLGK 60

Query: 61  YDVIVLAHGGGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKA 120
           YDV+V+AHGGGISGQAGAIRHGI+RALLK DPE+R SLK+AGFLTRDPRMKERKKYGLKA
Sbjct: 61  YDVLVIAHGGGISGQAGAIRHGISRALLKADPEFRPSLKRAGFLTRDPRMKERKKYGLKA 120

Query: 121 ARRAPQFSKR 130
           ARRAPQFSKR
Sbjct: 121 ARRAPQFSKR 130


>B1DJU1.1 B1DJU1_9BACL 30S ribosomal protein S9
          Length = 130

 Score =  235 bits (600), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 112/130 (86%), Positives = 126/130 (96%)

Query: 1   MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGN 60
           MAQVQYYGTGRRKHSVARVRLVPGEGRI++NKR+++EYFG+ETLK+IVKQPL LTETL N
Sbjct: 1   MAQVQYYGTGRRKHSVARVRLVPGEGRIIVNKRDLNEYFGLETLKLIVKQPLVLTETLNN 60

Query: 61  YDVIVLAHGGGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKA 120
           YDVIV+A+GGG+SGQAGAIRHGI+RALLK DPE+R +LK+AGFLTRDPRMKERKKYGLKA
Sbjct: 61  YDVIVIANGGGMSGQAGAIRHGISRALLKADPEFRPALKRAGFLTRDPRMKERKKYGLKA 120

Query: 121 ARRAPQFSKR 130
           ARRAPQFSKR
Sbjct: 121 ARRAPQFSKR 130


>Q9KGD4.1 RS9_BACHD 30S ribosomal protein S9
          Length = 130

 Score =  214 bits (544), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/130 (83%), Positives = 114/130 (87%)

Query: 1   MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGN 60
           MAQVQYYGTGRRKHSVARVRLVPG+G IVIN R +DEYFG+ETLK+IVKQPL  T T G 
Sbjct: 1   MAQVQYYGTGRRKHSVARVRLVPGDGNIVINGRSLDEYFGLETLKLIVKQPLVETGTEGQ 60

Query: 61  YDVIVLAHGGGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKA 120
           YDV V   GGG +GQAGAIRHGIARALL+VDPEYR SLK AGFLTRD RMKERKKYGLKA
Sbjct: 61  YDVRVNVDGGGFTGQAGAIRHGIARALLQVDPEYRPSLKSAGFLTRDARMKERKKYGLKA 120

Query: 121 ARRAPQFSKR 130
           ARRAPQFSKR
Sbjct: 121 ARRAPQFSKR 130


>C0ZIL4.1 RS9_BREBN 30S ribosomal protein S9
          Length = 130

 Score =  213 bits (542), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 114/130 (87%), Positives = 122/130 (93%)

Query: 1   MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGN 60
           MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMD YFG+ETLK+IVKQPL LTETLG 
Sbjct: 1   MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDTYFGLETLKLIVKQPLVLTETLGR 60

Query: 61  YDVIVLAHGGGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKA 120
           YDV+V  +GGG +GQAGAIRHG+ARALLK DPE RG+LK+AGFLTRDPRMKERKKYGLKA
Sbjct: 61  YDVLVNVNGGGTTGQAGAIRHGVARALLKADPELRGALKRAGFLTRDPRMKERKKYGLKA 120

Query: 121 ARRAPQFSKR 130
           ARRAPQFSKR
Sbjct: 121 ARRAPQFSKR 130


>Q5WLM8.1 RS9_BACSK 30S ribosomal protein S9
          Length = 130

 Score =  210 bits (535), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 115/130 (88%)

Query: 1   MAQVQYYGTGRRKHSVARVRLVPGEGRIVINKREMDEYFGVETLKMIVKQPLNLTETLGN 60
           MAQVQYYGTGRRKHSVARVRL+PGEG+IV+N R++DEYFG+ETLK+IVKQPL  T   G 
Sbjct: 1   MAQVQYYGTGRRKHSVARVRLIPGEGKIVVNGRDLDEYFGLETLKLIVKQPLVETGVTGQ 60

Query: 61  YDVIVLAHGGGISGQAGAIRHGIARALLKVDPEYRGSLKKAGFLTRDPRMKERKKYGLKA 120
           YDV V  +GGG +GQAGAIRHGIARALL+VDP+ R +LK AGFLTRD RMKERKKYGLKA
Sbjct: 61  YDVHVNVNGGGFTGQAGAIRHGIARALLQVDPDNRATLKAAGFLTRDARMKERKKYGLKA 120

Query: 121 ARRAPQFSKR 130
           ARRAPQFSKR
Sbjct: 121 ARRAPQFSKR 130


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 758,655,626
Number of extensions: 28446162
Number of successful extensions: 76749
Number of sequences better than 1.0e-05: 1743
Number of HSP's gapped: 76474
Number of HSP's successfully gapped: 1743
Length of query: 130
Length of database: 3,060,696,203
Length adjustment: 95
Effective length of query: 35
Effective length of database: 2,165,699,778
Effective search space: 75799492230
Effective search space used: 75799492230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)