BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0031.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5L2Q6.1 Q5L2Q6_GEOKA Phage-like element PBSX protein 103 2e-20 C2R8P3.1 C2R8P3_BACCE Putative uncharacterized protein 103 2e-20 C3C628.1 C3C628_BACTU Putative uncharacterized protein 99 5e-19 C3I9U2.1 C3I9U2_BACTU Putative uncharacterized protein 98 9e-19 C2ZYA7.1 C2ZYA7_BACCE Putative uncharacterized protein 97 2e-18 >Q5L2Q6.1 Q5L2Q6_GEOKA Phage-like element PBSX protein Length = 231 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 90/152 (59%), Gaps = 1/152 (0%) Query: 2 FIHYKKTHLEHFVEQIYIDHHIQIPEDITIEKLSTELNIYVEYAPIRSRAYESNSGIRCI 61 F Y+ T LE ++ ++Y I+ P + + ++ +LN+++ +A IRS A E N G+ I Sbjct: 3 FSSYQFTPLEQYICELYEHLEIKKPHQLDMIDIAAKLNVWLHFADIRSTAIERN-GVYSI 61 Query: 62 LLDNRITPMKQRFEFLHELCHILRHAGNQMVLPSPFIKAQEEDAEKFLLYATMPFFMIQP 121 ++D R++ +Q EF HEL H+LRHAGNQM+LP+ ++ QE A F L+ +P FM+ Sbjct: 62 IVDRRLSRQQQWQEFGHELGHVLRHAGNQMLLPASLVQLQEAQATNFALHFCVPTFMLLE 121 Query: 122 GALSDEYDVAIHQLSSIFGVSKDMAKKRFDQI 153 L ++ LS FGV AK+R+D+ Sbjct: 122 LELPYTEKEIVYVLSETFGVEPLFAKRRWDRF 153 >C2R8P3.1 C2R8P3_BACCE Putative uncharacterized protein Length = 163 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 3/159 (1%) Query: 5 YKKTHLEHFVEQIYIDHHIQIPEDITIEKLSTELNIYVEYAPIRSRAYESNSGIRCILLD 64 Y+ T LE ++ Y + I+ P D+ IEK++ + NI + I S Y +N I+ I+LD Sbjct: 8 YQTTLLEDWITSFYQNLGIRTPSDLCIEKIAHKCNIILLKENINS-YYIANDLIKMIVLD 66 Query: 65 NRITPMKQRFEFLHELCHILRHAGNQMVLPSPFIKAQEEDAEKFLLYATMPFFMIQPGAL 124 R++ KQR F HELCHI+RH G Q +PS F + QE DA +F +YA +PF M++ Sbjct: 67 ARLSLEKQREVFFHELCHIMRHVGIQGKMPSAFRELQEWDAVRFSIYAAIPFRMLEYINF 126 Query: 125 SDEYDVAIHQLSSIFGVSKDMAKKRFDQILRREYEGELI 163 S D + + +F VS ++ KKR QI +++ + LI Sbjct: 127 SK--DTLVADMCEMFQVSPELCKKRLLQIQKKQMKECLI 163 >C3C628.1 C3C628_BACTU Putative uncharacterized protein Length = 183 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 96/161 (59%), Gaps = 9/161 (5%) Query: 5 YKKTHLEHFVEQIYIDHHIQIPEDITIEKLSTELNIYVEYAPIRSRAYESNSGIRCILLD 64 Y T LE +++ +Y I +PE+I + +++ +L+I+V +AP S A E N G+ +++D Sbjct: 19 YYTTQLEDYIQHMYQSLSIIVPEEIDMMEIANKLSIWVYFAPFGSHAIERN-GMYSLVID 77 Query: 65 NRITPMKQRFEFLHELCHILRHAGNQMVLPSPFIKAQEEDAEKFLLYATMPFFMIQPGAL 124 NR T +Q +F HELCHIL H+GNQ+ + F+ QE A+ F L+ +P FM++ L Sbjct: 78 NRKTKQEQWEDFGHELCHILLHSGNQLFMSKMFLDYQEAKAKNFELHFCIPTFMLR-NLL 136 Query: 125 SDEYDVAIHQLSSIFGVSKDMAKKRFDQILRREYEGELIPD 165 S + +H ++ F VS A+KR +LR YE +L+ Sbjct: 137 SSH--LTVHFIAETFNVSLQFAEKR---LLR--YENQLLAS 170 >C3I9U2.1 C3I9U2_BACTU Putative uncharacterized protein Length = 171 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 98/164 (59%), Gaps = 15/164 (9%) Query: 5 YKKTHLEHFVEQIYIDHHIQIPEDITIEKLSTELNIYVEYAPIRSRAYESNSGIRCILLD 64 Y T LE +++ +Y I +PE+I + +++ +L+I+V +AP S A E N G+ +++D Sbjct: 7 YYTTQLEDYIQHMYQSLSIIVPEEIDMMEIANKLSIWVYFAPFGSHAIERN-GMYSLVID 65 Query: 65 NRITPMKQRFEFLHELCHILRHAGNQMVLPSPFIKAQEEDAEKFLLYATMPFFMIQ---P 121 NR T +Q +F HELCH+L H+GNQ+++ F++ QE A+ F L+ +P FM++ P Sbjct: 66 NRKTKQEQWEDFGHELCHLLLHSGNQLLMSKMFLEYQEAKAKNFELHFCIPTFMLRNLLP 125 Query: 122 GALSDEYDVAIHQLSSIFGVSKDMAKKRFDQILRREYEGELIPD 165 L+ +H ++ F VS A+KR +LR YE +L+ Sbjct: 126 SHLT------VHFIAETFNVSLQFAEKR---LLR--YENQLLAS 158 >C2ZYA7.1 C2ZYA7_BACCE Putative uncharacterized protein Length = 183 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 9/161 (5%) Query: 5 YKKTHLEHFVEQIYIDHHIQIPEDITIEKLSTELNIYVEYAPIRSRAYESNSGIRCILLD 64 Y T LE +++ +Y I +PE+I + +++ +LNI+V +AP S E N G+ +++D Sbjct: 19 YYTTQLEDYIQHMYQSLSIIVPEEIDMMEIANKLNIWVYFAPFGSHGIERN-GMYSLVID 77 Query: 65 NRITPMKQRFEFLHELCHILRHAGNQMVLPSPFIKAQEEDAEKFLLYATMPFFMIQPGAL 124 NR T +Q +F HELCH+L H+GNQ+ + F+ QE A+ F L+ +P FM++ Sbjct: 78 NRKTKQEQWEDFGHELCHMLLHSGNQLFMSKMFLDYQEAKAKNFELHFCIPTFMLRNLLP 137 Query: 125 SDEYDVAIHQLSSIFGVSKDMAKKRFDQILRREYEGELIPD 165 S + +H ++ F VS A+KR +LR YE +L+ Sbjct: 138 S---HLTVHFIAETFNVSLQFAEKR---LLR--YENQLLAS 170 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,715,357,531 Number of extensions: 69873192 Number of successful extensions: 148414 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 148396 Number of HSP's successfully gapped: 32 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)