BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0030.p
         (132 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6TLJ5.1 A6TLJ5_ALKMQ Helix-turn-helix domain protein                  97   4e-19
C3H4L3.1 C3H4L3_BACTU Phage transcriptional repressor                  94   3e-18
C3E6V0.1 C3E6V0_BACTU Phage transcriptional repressor                  94   4e-18
C2T4F6.1 C2T4F6_BACCE Phage transcriptional repressor                  94   4e-18
C2RRK6.1 C2RRK6_BACCE Phage transcriptional repressor                  94   4e-18

>A6TLJ5.1 A6TLJ5_ALKMQ Helix-turn-helix domain protein
          Length = 134

 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 63/78 (80%), Gaps = 3/78 (3%)

Query: 1   VQRAEVLKKLIEETGLNTKAFAEKAGLPYTTLRSILMRGVGGASVDNVIKVCRALGITAE 60
           V+RA++L+ LIEETGL+ KAF+ KA +PYTTLRSIL RG+G ASVDNV+K+C+ +GIT E
Sbjct: 26  VERAKILRSLIEETGLSIKAFSAKADIPYTTLRSILDRGIGNASVDNVMKICKTIGITVE 85

Query: 61  DMERLASG---TNQEAVT 75
           +++ + SG   + +EA T
Sbjct: 86  ELDSMVSGEARSQREAST 103


>C3H4L3.1 C3H4L3_BACTU Phage transcriptional repressor
          Length = 223

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 71/97 (73%), Gaps = 4/97 (4%)

Query: 1  VQRAEVLKKLIEETGLNTKAFAEKAGLPYTTLRSILMRGVGGASVDNVIKVCRALGITAE 60
          +++AEV+ +LI+E G + +AFAEK GLP TTL+S+L RG+G ASVDNVIKVC+ LGIT +
Sbjct: 5  MKKAEVVTRLIKEAGYSKRAFAEKIGLPPTTLQSMLSRGIGKASVDNVIKVCKGLGITTD 64

Query: 61 DMERLASGTNQEAVTPMLSELSEFEAFLNNPEHGLFF 97
          D+ERLA+   QE  T +  E+S +E   N+  + ++ 
Sbjct: 65 DLERLAT---QEGNT-VKEEVSIYETIQNDQSNIIYI 97


>C3E6V0.1 C3E6V0_BACTU Phage transcriptional repressor
          Length = 223

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 71/97 (73%), Gaps = 4/97 (4%)

Query: 1  VQRAEVLKKLIEETGLNTKAFAEKAGLPYTTLRSILMRGVGGASVDNVIKVCRALGITAE 60
          +++AEV+ +LI+E G + +AFAEK GLP TTL+S+L RG+G ASVDNVIKVC+ LGIT +
Sbjct: 5  MKKAEVVTRLIKEAGYSKRAFAEKIGLPPTTLQSMLSRGIGKASVDNVIKVCKGLGITTD 64

Query: 61 DMERLASGTNQEAVTPMLSELSEFEAFLNNPEHGLFF 97
          D+ERLA+   QE  T +  E+S +E   N+  + ++ 
Sbjct: 65 DLERLAT---QEDNT-VKEEVSIYETIQNDQSNIIYI 97


>C2T4F6.1 C2T4F6_BACCE Phage transcriptional repressor
          Length = 223

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 71/97 (73%), Gaps = 4/97 (4%)

Query: 1  VQRAEVLKKLIEETGLNTKAFAEKAGLPYTTLRSILMRGVGGASVDNVIKVCRALGITAE 60
          +++AEV+ +LI+E G + +AFAEK GLP TTL+S+L RG+G ASVDNVIKVC+ LGIT +
Sbjct: 5  MKKAEVVTRLIKEAGYSKRAFAEKIGLPPTTLQSMLSRGIGKASVDNVIKVCKGLGITTD 64

Query: 61 DMERLASGTNQEAVTPMLSELSEFEAFLNNPEHGLFF 97
          D+ERLA+   QE  T +  E+S +E   N+  + ++ 
Sbjct: 65 DLERLAT---QEDNT-VKEEVSIYETIQNDQSNIIYI 97


>C2RRK6.1 C2RRK6_BACCE Phage transcriptional repressor
          Length = 223

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 71/97 (73%), Gaps = 4/97 (4%)

Query: 1  VQRAEVLKKLIEETGLNTKAFAEKAGLPYTTLRSILMRGVGGASVDNVIKVCRALGITAE 60
          +++AEV+ +LI+E G + +AFAEK GLP TTL+S+L RG+G ASVDNVIKVC+ LGIT +
Sbjct: 5  MKKAEVVTRLIKEAGYSKRAFAEKIGLPPTTLQSMLSRGIGKASVDNVIKVCKGLGITTD 64

Query: 61 DMERLASGTNQEAVTPMLSELSEFEAFLNNPEHGLFF 97
          D+ERLA+   QE  T +  E+S +E   N+  + ++ 
Sbjct: 65 DLERLAT---QEDNT-VKEEVSIYETIQNDQSNIIYI 97


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 731,268,968
Number of extensions: 26325341
Number of successful extensions: 93987
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 93992
Number of HSP's successfully gapped: 30
Length of query: 132
Length of database: 3,060,696,203
Length adjustment: 97
Effective length of query: 35
Effective length of database: 2,146,857,748
Effective search space: 75140021180
Effective search space used: 75140021180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)