BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0025.p (172 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8GLL5.1 A8GLL5_SERP5 Major tail tube protein 150 5e-35 A4J3U4.1 A4J3U4_DESRM Phage major tail tube protein 132 1e-29 C2BG22.1 C2BG22_9FIRM Phage major tail tube protein 125 9e-28 C3WBB4.1 C3WBB4_FUSMR Major tail tube protein 119 1e-25 A5Z432.1 A5Z432_9FIRM Putative uncharacterized protein 116 6e-25 >A8GLL5.1 A8GLL5_SERP5 Major tail tube protein Length = 173 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 68/167 (40%), Positives = 102/167 (61%) Query: 6 ERVIDYSVYLNATDYLGTATATLPEITYLVDTVKGGGIAGEMAAPSPGHTGAMSLALKWR 65 E++I+Y VY G A TLP++ + DTV G GIAGE+ +P GH +MS +KWR Sbjct: 7 EKLINYRVYDEGNVLQGIADVTLPDLEAMSDTVSGAGIAGEVDSPVLGHFQSMSATIKWR 66 Query: 66 TIEKAAAALLAPKVHTLDLRASIQTFDTATSEYREVPFKVTVRARPLGLTLGNLDTAAVM 125 T+ K+ L K H LD R S Q +D EY+ VP +V+++ P LG+ Sbjct: 67 TVGKSLIKLTRQKSHQLDFRGSQQIYDAGAGEYKTVPVRVSIKGTPKKTGLGSFQVGKPT 126 Query: 126 DTTNNFSVNYLKVSLDGIEVLEIDKYNYIHKVNDVDYLATTKANLGL 172 D+ N F ++Y+K+ +DG E+LEIDKYN+I K++ D+LA+ +A++G Sbjct: 127 DSENEFEISYIKIYVDGTELLEIDKYNFICKIDGEDFLASVRADIGF 173 >A4J3U4.1 A4J3U4_DESRM Phage major tail tube protein Length = 175 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 94/167 (56%), Gaps = 1/167 (0%) Query: 6 ERVIDYSVYLNA-TDYLGTATATLPEITYLVDTVKGGGIAGEMAAPSPGHTGAMSLALKW 64 ER+ ++ VYL+ D G A LP L DTVKG GIAGE +P+ GH G+M L L W Sbjct: 8 ERLANFRVYLDGKQDLKGVADLELPSFESLKDTVKGAGIAGEYESPTLGHFGSMKLTLNW 67 Query: 65 RTIEKAAAALLAPKVHTLDLRASIQTFDTATSEYREVPFKVTVRARPLGLTLGNLDTAAV 124 RT+EKA L+ + LD R + Q +D Y+ +V ++ P+ G + A Sbjct: 68 RTVEKALLILMKQQAQRLDCRGAFQDYDAGEGSYKIRAVRVVIQGPPISTKPGKYENGAA 127 Query: 125 MDTTNNFSVNYLKVSLDGIEVLEIDKYNYIHKVNDVDYLATTKANLG 171 ++ V YLKV++DG +++EIDK+N+I K+ VDYL K LG Sbjct: 128 TGGSSEVEVFYLKVTIDGEDLVEIDKFNFICKIGGVDYLKDIKTALG 174 >C2BG22.1 C2BG22_9FIRM Phage major tail tube protein Length = 171 Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 97/163 (59%) Query: 9 IDYSVYLNATDYLGTATATLPEITYLVDTVKGGGIAGEMAAPSPGHTGAMSLALKWRTIE 68 I++SVY A ++LG A ATLPEI+ + + +KG GIAG + P GH MSL L +R+ Sbjct: 8 INFSVYEGANEFLGMAEATLPEISSMTEEIKGAGIAGSFSGPYTGHLEPMSLTLNFRSTT 67 Query: 69 KAAAALLAPKVHTLDLRASIQTFDTATSEYREVPFKVTVRARPLGLTLGNLDTAAVMDTT 128 +AA LL P H ++LRA+ Q +D + K V A P+ + G L +A+ D + Sbjct: 68 RAAVQLLKPIAHQIELRAAQQKWDNNAGKNIVESVKHVVVANPIKMAPGKLASASPTDGS 127 Query: 129 NNFSVNYLKVSLDGIEVLEIDKYNYIHKVNDVDYLATTKANLG 171 +SV+Y + +DG +V+EID N+I+ V+ VDYL + LG Sbjct: 128 GEYSVSYYAIFIDGQKVVEIDIINFIYYVDGVDYLEDVRKALG 170 >C3WBB4.1 C3WBB4_FUSMR Major tail tube protein Length = 172 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 7/171 (4%) Query: 6 ERVIDYSVYLNATDYLGTATA----TLPEITYLVDTVKGGGIAGEMAAPSPGHTGAMSLA 61 E++ +Y +Y TD T TA LPE+ ++ +T+ G GIAGE+ + + GHT ++L Sbjct: 5 EKLSNYMLY---TDGSRTQTALVDVDLPELQFMTETISGAGIAGEIESITAGHTSPLTLG 61 Query: 62 LKWRTIEKAAAALLAPKVHTLDLRASIQTFDTATSEYREVPFKVTVRARPLGLTLGNLDT 121 L R + LL P+ + L+++A IQ+FD + + + R P ++LG + Sbjct: 62 LNIRALIGEDFTLLEPRAYNLEIKAGIQSFDKTAGKIEQGKLSIFARGIPKTMSLGKVSV 121 Query: 122 AAVMDTTNNFSVNYLKVSLDGIEVLEIDKYNYIHKVNDVDYLATTKANLGL 172 D+ F+V+YLKV DG EVLEIDK N I K+ VDYLA +A +G+ Sbjct: 122 GKATDSKKEFAVDYLKVEYDGEEVLEIDKLNMICKIKGVDYLADLRAAMGM 172 >A5Z432.1 A5Z432_9FIRM Putative uncharacterized protein Length = 172 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/171 (38%), Positives = 95/171 (55%) Query: 1 MTKRSERVIDYSVYLNATDYLGTATATLPEITYLVDTVKGGGIAGEMAAPSPGHTGAMSL 60 M K E VI ++VY +AT+Y+G + TLPEI+ + + + G GI G++ + G AMSL Sbjct: 1 MPKIDETVIGFAVYEDATEYIGISEVTLPEISNITEEISGAGIGGKIESVILGAIEAMSL 60 Query: 61 ALKWRTIEKAAAALLAPKVHTLDLRASIQTFDTATSEYREVPFKVTVRARPLGLTLGNLD 120 L +RT+ A L P+ H +DLRA+ Q DT V K + P L G + Sbjct: 61 TLNFRTVTNNAIKLHEPRQHNIDLRAAQQQKDTVKGTTEVVSVKHILVVTPKKLNPGKVA 120 Query: 121 TAAVMDTTNNFSVNYLKVSLDGIEVLEIDKYNYIHKVNDVDYLATTKANLG 171 TAA + + ++V+Y +DG + LEID NYI+ VN DYLA + LG Sbjct: 121 TAAAAEVSGEYAVSYYATYIDGKKKLEIDPLNYIYYVNGKDYLADVRKALG 171 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.131 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 955,373,370 Number of extensions: 35501091 Number of successful extensions: 100192 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 100209 Number of HSP's successfully gapped: 66 Length of query: 172 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 46 Effective length of database: 1,873,648,313 Effective search space: 86187822398 Effective search space used: 86187822398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)