BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0023.p (999 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1RJ21.1 B1RJ21_CLOPE Phage tail tape measure protein, family, c... 172 1e-40 C0CC83.1 C0CC83_9FIRM Putative uncharacterized protein 171 3e-40 A7VT93.1 A7VT93_9CLOT Putative uncharacterized protein 171 3e-40 A7VNP8.1 A7VNP8_9CLOT Putative uncharacterized protein 166 1e-38 A6LRX1.1 A6LRX1_CLOB8 Putative uncharacterized protein 159 2e-36 >B1RJ21.1 B1RJ21_CLOPE Phage tail tape measure protein, family, core region Length = 933 Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 128/454 (28%), Positives = 219/454 (48%), Gaps = 86/454 (18%) Query: 58 REVEQADDSIADAGGNVEGFGDKLKNA----------VKEIDFSMLNKAVEPLKAVWTAV 107 +EV+ DS+ + + FG+ + + E S++ E LK+ Sbjct: 169 KEVDDFADSLNQSSAEITEFGENMAQIGEGVMMVGEKIGETGESIVGAFSEGLKSA---- 224 Query: 108 NESSEAMAQLQAETGMSSKEMKEMKEISNNLYSQNYGKNFEDIGNAVGAVKQVLQQTGDE 167 NE +A LQ G++ +E+++M I +Y+ N+G++F D+ +AV V + L TGDE Sbjct: 225 NELKKAFNTLQTNVGLTKEEIEKMGPIIEKIYNNNFGESFNDVASAVALVNKHLWLTGDE 284 Query: 168 LEKTTQTAMTYRDVFKEDITGSLQAVDSMMQKFGISSEQAYNLMAQGAQKGLNTSGGLLN 227 L+ T+ A RDVF DI S+++VD++M+ FGISS++A+NL+ QGAQ+GL+ S LL+ Sbjct: 285 LQGATEKAFLMRDVFGYDINESVRSVDALMKNFGISSDEAFNLLTQGAQQGLDFSDELLD 344 Query: 228 AIEKYSVDFKKMGYSADEMFELLSAGMENGASSLDGVADTVKVFGTTIKNGSDSTKAAIY 287 + +YSV FKK G +A++MF +L G + GA +LD + D VK F + +GS T A+ Sbjct: 345 TVNEYSVQFKKAGLTAEDMFNILYDGTQTGAWNLDKIGDAVKEFNIRLTDGSKGTSEALE 404 Query: 288 ELFAPEQLKKFSAALVSGGTKSKEFAQLVKVAGKASAAALVGDLKSGGDSANKAMLQLQK 347 +L G S++ A + GG+ A K Sbjct: 405 KL----------------GMDSEKVAL---------------TMSEGGEGAKK------- 426 Query: 348 TLGTGDTIFKGLADGSMTGKEAMEQVILKLKGIKEPIHQAKLAGSLFGSQFEDMGNKAVL 407 T I +A SM+ K+ Q + +LFG+ +ED+G + V Sbjct: 427 ---TYSEIIDKIA--SMSNKQ----------------EQNLVGVALFGTMWEDLGPEVVG 465 Query: 408 ALGQTRNEFDMTRQTLEEAAEIKDSTLSEQFAAMGRELQANLVIPLTESLMPALQ----- 462 LG + F+ T ++ ++ EIK L + R + ++IP+ ++++P ++ Sbjct: 466 ILGDIGDNFNSTIESADQMNEIKYDDLESTLEGLKRNFETGIIIPIGQAILPLIEQMLPK 525 Query: 463 ------GLTSWVSNNKE--SLMVIGLTVPAAVLA 488 + SW+ N + + + I + V +LA Sbjct: 526 IQEVVNSIKSWIEENPKLATALFILMGVIGGILA 559 >C0CC83.1 C0CC83_9FIRM Putative uncharacterized protein Length = 861 Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 129/466 (27%), Positives = 216/466 (46%), Gaps = 90/466 (19%) Query: 29 SVEEAEHQVQGLDQALQEMVRRGYFDTLRREVEQADD----------------------- 65 S++EAE QVQ Q + V + +D L+RE+ ++ Sbjct: 74 SLKEAEKQVQ--QQFERGEVSQAQYDALQREIVSTENQLKSLQTQAKTTNTVVGKIGDAA 131 Query: 66 -SIADAGGNVEGFGDKLKNAVKEIDFSMLNKAVEPLKAVWTAVNESSEAMAQLQAETGMS 124 ++AD ++ D L K +++ +K V ++ A+ A+TG + Sbjct: 132 KAVADGTNDLADSIDNLNGKAKVASAAVVGGGTLAVKTV----SDVDSAVGSFLAQTGAA 187 Query: 125 SKEMKEMKEISNNLYSQNYGKNFEDIGNAVGAVKQVLQQTG-DELEKTTQTAMTYRDVFK 183 + ++ K+ N+Y +NYG+NFEDI N++ V++ L +E T+ A+ RD F Sbjct: 188 ESQTEDWKQALENIYKENYGENFEDIANSMATVQKTLDDVDPSNIELLTEDAIALRDTFG 247 Query: 184 EDITGSLQAVDSMMQKFGISSEQAYNLMAQGAQKGLNTSGGLLNAIEKYSVDFKKMGYSA 243 ++ S +A ++M FG+S+ QA+NL+A GAQ GL+ SG LL+ I +YSV F K+G+SA Sbjct: 248 YEVNESTRAAKALMDNFGVSAHQAFNLIATGAQNGLDYSGELLDTISEYSVQFGKVGFSA 307 Query: 244 DEMFELLSAGMENGASSLDGVADTVKVFGTTIKNGSDSTKAAIYELFAPEQLKKFSAALV 303 D+ F ++ +G +N A +LD V D +K + +GSD+T+ + F + Sbjct: 308 DDFFNIMQSGSQNSAFNLDKVGDAIKELSIRVIDGSDTTQ------------QGFDLIGL 355 Query: 304 SGGTKSKEFAQLVKVAGKASAAALVGDLKSGGDSANKAMLQLQKTLGTGDTIFKGLADGS 363 + +K+FAQ GGD+A K Sbjct: 356 NADEMAKKFAQ-------------------GGDTARK----------------------- 373 Query: 364 MTGKEAMEQVILKLKGIKEPIHQAKLAGSLFGSQFEDMGNKAVLALGQTRNEFDMTRQTL 423 A +Q I L +++P+ Q LFG+ +ED+G+ A LALG + + L Sbjct: 374 -----AFDQTIAALAAMEDPVQQNIAGVDLFGTMWEDLGSTATLALGDISDSAYAAKDNL 428 Query: 424 EEAAEIKDSTLSEQFAAMGRELQANLVIPLTESLMPALQGLTSWVS 469 EE E K L +GR ++ +++ PL E LMP + + +S Sbjct: 429 EEIKEEKYENLINDLQEVGRTIRLDILTPLGEQLMPIIDEIVGNIS 474 >A7VT93.1 A7VT93_9CLOT Putative uncharacterized protein Length = 706 Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 118/366 (32%), Positives = 189/366 (51%), Gaps = 68/366 (18%) Query: 101 KAVWTAVNESSEAMAQLQAETGMSSKEMKEMKEISNNLYSQNYGKNFEDIGNAVGAVKQV 160 KAV AV+ +AM Q A TG++ E+ + + ++Y+ NYG +FED+ +A+ AV Q Sbjct: 72 KAVTGAVS-FDQAMNQFAASTGIAGSELSDYENTLKDIYTNNYGDSFEDVADAMAAVTQ- 129 Query: 161 LQQTGD----ELEKTTQTAMTYRDVFKEDITGSLQAVDSMMQKFGISSEQAYNLMAQGAQ 216 Q GD L+ T++A T RD F DI S++A ++MM +FGI ++A L+A GAQ Sbjct: 130 --QMGDLDQASLQNITESAFTLRDTFGYDINESVRAANTMMTQFGIDGDKAMGLIATGAQ 187 Query: 217 KGLNTSGGLLNAIEKYSVDFKKMGYSADEMFELLSAGMENGASSLDGVADTVKVFGTTIK 276 GL+ SG LL++I +YSV F K+G AD+MF ++ +G E+GA +LD V D +K + Sbjct: 188 NGLDFSGELLDSISEYSVQFAKVGLDADDMFAIMESGAESGAFNLDKVGDAIKEMSIRVV 247 Query: 277 NGSDSTKAAIYELFAPEQLKKFSAALVSGGTKSKEFAQLVKVAGKASAAALVGDLKSGGD 336 +GS +T+ + FSA ++ + +FA +GGD Sbjct: 248 DGSATTQ------------EGFSAIGLNADEMAAKFA-------------------AGGD 276 Query: 337 SANKAMLQLQKTLGTGDTIFKGLADGSMTGKEAMEQVILKLKGIKEPIHQAKLAGSLFGS 396 SA KEA +Q I L +++P+ Q + +LFG+ Sbjct: 277 SA----------------------------KEAFDQTIQALADMEDPLAQNQAGVALFGT 308 Query: 397 QFEDMGNKAVLALGQTRNEFDMTRQTLEEAAEIKDSTLSEQFAAMGRELQANLVIPLTES 456 +ED+G + V L + T ++EE +IK L ++GR ++ L++PL E+ Sbjct: 309 MWEDLGPEVVTQLANIEDGAYATSDSMEELKDIKYDDLGSMMESLGRSVE-TLLLPLGEA 367 Query: 457 LMPALQ 462 L+P +Q Sbjct: 368 LIPLIQ 373 >A7VNP8.1 A7VNP8_9CLOT Putative uncharacterized protein Length = 780 Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 116/357 (32%), Positives = 182/357 (50%), Gaps = 67/357 (18%) Query: 112 EAMAQLQAETGMSSKEMKEMKEISNNLYSQNYGKNFEDIGNAVGAVKQVLQQTGD----E 167 +AM Q A TG+S + + +E ++Y+ NYG++F DI +A+ AV Q Q GD Sbjct: 135 QAMNQFAASTGVSKESLDSYEETLKSIYTNNYGESFGDIADAMSAVTQ---QMGDLDQAS 191 Query: 168 LEKTTQTAMTYRDVFKEDITGSLQAVDSMMQKFGISSEQAYNLMAQGAQKGLNTSGGLLN 227 L+ T++A T RD F DI S++A ++MM +FGIS + A NL+A GAQ GL+ SG LL+ Sbjct: 192 LQNITESAFTLRDTFGYDINESVRAANAMMTQFGISGDDAMNLIATGAQNGLDFSGELLD 251 Query: 228 AIEKYSVDFKKMGYSADEMFELLSAGMENGASSLDGVADTVKVFGTTIKNGSDSTKAAIY 287 +I +YSV F K+G AD+MF ++ +G E+GA +LD V D +K + +GS +T+ Sbjct: 252 SISEYSVQFAKVGLDADDMFAIMESGAESGAFNLDKVGDAIKEMSIRVVDGSATTQ---- 307 Query: 288 ELFAPEQLKKFSAALVSGGTKSKEFAQLVKVAGKASAAALVGDLKSGGDSANKAMLQLQK 347 + FSA ++ + +FA +GGDSA Sbjct: 308 --------EGFSAIGLNADEMAAKFA-------------------AGGDSA--------- 331 Query: 348 TLGTGDTIFKGLADGSMTGKEAMEQVILKLKGIKEPIHQAKLAGSLFGSQFEDMGNKAVL 407 KEA +Q I L + +P+ Q++ +LFG+ +ED+G + V Sbjct: 332 -------------------KEAFDQTIQALADMDDPLAQSQAGVALFGTMWEDLGPEVVT 372 Query: 408 ALGQTRNEFDMTRQTLEEAAEIKDSTLSEQFAAMGRELQANLVIPLTESLMPALQGL 464 AL ++ T + LE ++K L + R + L++PL E+L+P L L Sbjct: 373 ALAGIQDSAYATGEELENMKDVKYDDLGSMLDELKRGFEM-LLVPLGEALIPLLSTL 428 >A6LRX1.1 A6LRX1_CLOB8 Putative uncharacterized protein Length = 317 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 104/334 (31%), Positives = 170/334 (50%), Gaps = 61/334 (18%) Query: 98 EPLKAVWTAVNESSEAMAQLQAETGMSSKEMKEMKEISNNLYSQNYGKNFEDIGNAVGAV 157 E + T NE +++ + +G++ M MK + ++Y+ N+G+NFE+IG A+ AV Sbjct: 44 EGIVETVTFGNELQKSLNGVMTSSGLAETGMDRMKNVMLDIYNDNFGENFEEIGEALKAV 103 Query: 158 KQVLQQTGDELEKTTQTAMTYRDVFKEDITGSLQAVDSMMQKFGISSEQAYNLMAQGAQK 217 + TGD+L+ T+ A+ +D F ++ S+++ ++M++FGI ++A+NL+AQG Q Sbjct: 104 GEQTGYTGDDLKGLTENAIALKDTFGYEVKESVRSASTLMKQFGIDGDEAFNLIAQGKQG 163 Query: 218 GLNTSGGLLNAIEKYSVDFKKMGYSADEMFELLSAGMENGASSLDGVADTVKVFGTTIKN 277 GL+ SG +L++I +YSV FKK+G +A++MF +LSAG GA +LD V D +K F + Sbjct: 164 GLDFSGEMLDSINEYSVQFKKLGLNAEDMFNILSAGSAEGAFNLDKVGDAIKEFSIRAID 223 Query: 278 GSDSTKAAIYEL-FAPEQLKKFSAALVSGGTKSKEFAQLVKVAGKASAAALVGDLKSGGD 336 GS +T +L F + L + +FAQ GGD Sbjct: 224 GSKTTADGFSQLGFNADDL-------------AAKFAQ-------------------GGD 251 Query: 337 SANKAMLQLQKTLGTGDTIFKGLADGSMTGKEAMEQVILKLKGIKEPIHQAKLAGSLFGS 396 SA K+ E VI L +K+P+ Q+++ LFG+ Sbjct: 252 SA----------------------------KDTFEDVITALSNMKDPLKQSQIGVELFGT 283 Query: 397 QFEDMGNKAVLALGQTRNEFDMTRQTLEEAAEIK 430 QFED+G + +LG E T L + +IK Sbjct: 284 QFEDLGINVIESLGNVDGEISNTYDALAQINKIK 317 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.127 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 5,394,322,697 Number of extensions: 221755998 Number of successful extensions: 721883 Number of sequences better than 1.0e-05: 142 Number of HSP's gapped: 721951 Number of HSP's successfully gapped: 155 Length of query: 999 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 853 Effective length of database: 1,685,228,013 Effective search space: 1437499495089 Effective search space used: 1437499495089 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 137 (57.4 bits)