BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0188.0022.p (340 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4J3U7.1 A4J3U7_DESRM Phage late control D family protein 253 2e-65 C2BG18.1 C2BG18_9FIRM Phage protein 223 1e-56 A8GLL2.1 A8GLL2_SERP5 Late control D family protein 217 1e-54 A5Z428.1 A5Z428_9FIRM Putative uncharacterized protein 207 1e-51 B1HTM7.1 B1HTM7_LYSSC Probable bacteriophage regulatory protein 195 4e-48 >A4J3U7.1 A4J3U7_DESRM Phage late control D family protein Length = 339 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 131/334 (39%), Positives = 190/334 (56%), Gaps = 1/334 (0%) Query: 5 RRAVLELKYNGKDITMDIAKSLTDFQYNDAVSGSLDDLTVSLEDRERNWQGPWVPVEGDQ 64 RRA LEL YNG +I+ D+ L ++ D +SG DD+ ++LEDR R W G W+P +G Sbjct: 4 RRAHLELSYNGINISADLQPHLINWTSTDNLSGQADDIQITLEDRARLWIGDWMPDKGAT 63 Query: 65 INASIRTINWDKPGENKKLPLGTFEIDSIDFNGPPDTISIKAVSLPISSEIRMQRSSRSW 124 + A I N + L LGTFEID ++ N PP T+S+K +S+P SS ++ + +++W Sbjct: 64 LKAKIVQENKKFANTKESLDLGTFEIDEVENNYPPSTVSMKGISIPESSSLKGEAKNKAW 123 Query: 125 EKTNLKTVAAQVAKRANLKLIYEAQDNPSYERLEQSEMSDLAFLLNTATQEGIAIKVSGG 184 EKT L +A +A + +KL Y+ D+P Y+R+EQ++ SDLAFL G+ +KV+G Sbjct: 124 EKTKLSVIAKDIANGSGVKLFYDTSDDPDYDRMEQTQESDLAFLTRLCNDAGLCLKVTGT 183 Query: 185 SLILFDEMVYEQKEAITTIVRGDDNVTGYSFALNTAYAAFRACTVTYTPPTSKEPLKATY 244 + +FDE YEQ+ IT I+ G+ + GY T +++C V Y K+ +K + Sbjct: 184 QINIFDEQKYEQQPPITRIMVGEGFIKGYR-CRTTLNGLYKSCRVEYYDANKKQTIKFVF 242 Query: 245 TPNGAPKNGPVLKINEQVDTXXXXXXXXXXXXXXXXXEGGKGTLSLMGDIRMVTGLTINI 304 TP PK G VL INE+V + EG +L LMGD+R G+T+ + Sbjct: 243 TPPNPPKTGRVLVINERVTSVQEAERLAKKRLRQANREGMTVSLDLMGDVRFAAGVTVRL 302 Query: 305 KGWQRFDGKYIIESAKHSIGSSGYTTNLEIRKVL 338 G+ FDG YII A HS GY T LE+RK L Sbjct: 303 VGFGVFDGNYIIIQAAHSQQGGGYETKLELRKCL 336 >C2BG18.1 C2BG18_9FIRM Phage protein Length = 346 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 118/340 (34%), Positives = 189/340 (55%), Gaps = 7/340 (2%) Query: 4 ARRAVLELKYNGKDITMDIAKSLTDFQYNDAVSGSLDDLTVSLEDRERNWQGPWVPV--- 60 ARR LE+KY+G DI+ D+ L Y D DDL +++ED+E W W+ Sbjct: 6 ARRTKLEVKYDGADISKDLEYFLNSLTYTDNEEDESDDLQIAVEDKEGRWARDWLKQTGF 65 Query: 61 -EGDQINASIRTINWDKPGENKKLPLGTFEIDSIDFNGPPDTISIKAVSLPISSEIRMQR 119 +G +I ASI I D+ ++L G F++D+++ +GPP +++KA ++P S+I + Sbjct: 66 GKGGEIEASI--IQIDEDLNERELKCGKFKVDTVNESGPPTKVTLKASAIPTDSKIIAEE 123 Query: 120 SSRSWEKTNLKTVAAQVAKRANLKLIYEAQDNPSYERLEQSEMSDLAFLLNTATQEGIAI 179 +++WE L +A +A + LK +E++++P Y+R EQS+ SD+ FL GI++ Sbjct: 124 KNKAWENIKLSAIAKDIAGKNKLKSEFESEEDPLYDRREQSKKSDIEFLKELCKDAGISL 183 Query: 180 KVSGGSLILFDEMVYEQKEAITTIVRGDDNVTGYSFALNTAYAAFRACTVTYTPPTSKEP 239 KV+ ++LFD +E+ I TI RG+ NV ++F N A + C VTYT P +KE Sbjct: 184 KVTDKKIVLFDASKFEKLTPIDTIKRGESNVLRWTFGTNFIEAGYSKCEVTYTDPKTKET 243 Query: 240 LKATY-TPNGAPKNGPVLKINEQVDTXXXXXXXXXXXXXXXXXEGGKGTLSLMGDIRMVT 298 +K + P G +LKIN +V + + +L L+G+I V Sbjct: 244 IKGEFKNPKADQSTGRILKINTKVKDKAEADKLAKKQLREKNKKETQASLELVGNINYVA 303 Query: 299 GLTINIKGWQRFDGKYIIESAKHSIGSSGYTTNLEIRKVL 338 G+ + I GW +DGKY+I+SA H+I + GY +L +RKVL Sbjct: 304 GVNLKIDGWGIYDGKYMIQSADHNISNGGYKVSLSLRKVL 343 >A8GLL2.1 A8GLL2_SERP5 Late control D family protein Length = 329 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 187/334 (55%), Gaps = 9/334 (2%) Query: 5 RRAVLELKYNGKDITMDIAKSLTDFQYNDAVSGSLDDLTVSLEDRERNWQGPWVPVEGDQ 64 ++ + + Y G DIT DI+ + Y D G +DD+T++L+D W GPW+P +GD Sbjct: 2 KKTLFTVVYEGTDITNDISDDVLSITYVDNEDGKVDDVTITLKDENSKWIGPWMPKKGDL 61 Query: 65 INASIRTINWDKPGENKKLPLGTFEIDSIDFNGPPDTISIKAVSLPISSEIRMQRSSRSW 124 ++ I KP L G FE+D I +GPP I IKAVS+P S IR +++W Sbjct: 62 LSVVI------KPFNAIALNCGKFEVDEISASGPPSVIEIKAVSVPTKSGIRRLLKTKAW 115 Query: 125 EKTNLKTVAAQVAKRANLKLIYEAQDNPSYERLEQSEMSDLAFLLNTATQEGIAIKVSGG 184 EKT LKT+A ++A + L+ +Y ++P Y R +Q+E SDLAFL A EG ++KV+ Sbjct: 116 EKTTLKTIATEMATASKLEFLYLVDEDPYYGRQDQTEQSDLAFLHRLAQDEGFSLKVTDS 175 Query: 185 SLILFDEMVYEQKEAITTIVRGDDNVTGYSFALNTAYAAFRACTVTYTPPTSKEPLKATY 244 L++FD+ ++E K+ ITT +TG+ F+ ++ +++CT Y P K+ + TY Sbjct: 176 QLVIFDQAMFESKDPITTFYHKQPPLTGWGFSTQ-SHDLYKSCTCKYRIPKKKKTIAYTY 234 Query: 245 TPNGAPKNGPVLKINEQVDTXXXXXXXXXXXXXXXXXEGGKGTLSLMGDIRMVTGLTINI 304 T + ++G LKI + V G+L++ G+ MV G+T Sbjct: 235 T-DPDIEDGSNLKIRKLVANGDEAKRKARAMLRMKNRYQYTGSLTMPGNTDMVAGVTFIY 293 Query: 305 KGWQRFDGKYIIESAKHSIGSSGYTTNLEIRKVL 338 G FDGKYI++ + H++ ++GYTT +EIR+V+ Sbjct: 294 AGSGGFDGKYIVQQSTHTV-AAGYTTTIEIRRVI 326 >A5Z428.1 A5Z428_9FIRM Putative uncharacterized protein Length = 345 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 164/278 (58%), Gaps = 1/278 (0%) Query: 61 EGDQINASIRTINWDKPGENKKLPLGTFEIDSIDFNGPPDTISIKAVSLPISSEIRMQRS 120 +G +I+A + N G++K L G FEIDS+ + GPP ++IKA S+P S+++R ++ Sbjct: 66 KGTEIHAIVIQKNPYSDGKDKVLDCGKFEIDSVSYQGPPQKLTIKATSIPYSTKLRQEKK 125 Query: 121 SRSWEKTNLKTVAAQVAKRANLKLIYEAQDNPSYERLEQSEMSDLAFLLNTATQEGIAIK 180 S++WE TNLK +A ++ K ++K++Y + NPSY+R EQ +D+ FL GI++K Sbjct: 126 SKTWENTNLKNIAEKIGKGNSMKVMYLSSHNPSYKRKEQVNTADIVFLKKLCKNAGISLK 185 Query: 181 VSGGSLILFDEMVYEQKEAITTIVRGDDNVTGYSFALNTAYAAFRACTVTYTPPTSKEPL 240 V+ +++LFDE YE+K ++ I G N+ YSF+ TA ++ C V+YT P +K+ + Sbjct: 186 VTSKTIVLFDEADYEKKSSVKKIKAGKGNILSYSFSTKTADTSYSKCHVSYTDPNTKKTI 245 Query: 241 KATYTPNGAPKNGPVLKINEQVDTXXXXXXXXXXXXXXXXXEGGKGTLSLMGDIRMVTGL 300 +ATYT GA +G + +V + +L+GD+ V G+ Sbjct: 246 EATYTAPGADPDGQTYEFKHKVTSQAEALELAKCQLRQRNKGETTAEFTLVGDVDYVAGI 305 Query: 301 TINIKGWQRFDGKYIIESAKHSIGSSGYTTNLEIRKVL 338 T+ + G+ FDGKYI+E A+HSI + GY +++R VL Sbjct: 306 TVTVYGYGEFDGKYIVEQAQHSI-TGGYKVQIKLRSVL 342 >B1HTM7.1 B1HTM7_LYSSC Probable bacteriophage regulatory protein Length = 338 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 113/340 (33%), Positives = 185/340 (54%), Gaps = 16/340 (4%) Query: 4 ARRAVLELKYNGKDITMDIAKSLTDFQYNDAVSGSLDDLTVSLEDRERNWQGPWVPVEGD 63 A+ L + YN ++I ++K L + Y D +SG +DDL + LED E W G W P +G Sbjct: 7 AKSTRLNILYNHQNINETLSKHLISWTYTDHLSGEIDDLNIELEDSEALWLGAWFPSKGS 66 Query: 64 QINASIRTINWDKPGENKKLPLGTFEIDSIDFNGPPDTISIKAVSLPISSEIRMQRSSRS 123 I A I +NW+ G++ K +G FE+D+I +G TI+I A++ S +R + S++ Sbjct: 67 LIQADIEKLNWE--GDSFKQKIGKFEVDTI--SGNESTITIMALATSEKSSLRGEHKSKA 122 Query: 124 WEKTNLKTVAAQVAKRANLKLIYEAQDNPSYERLEQSEMSDLAFLLNTATQEGIAIKVSG 183 WEK LK+V +++AKR +KL++++ +NP+ +R+EQ +DLAF+ EG+ +K++ Sbjct: 123 WEKVKLKSVFSEIAKRNGMKLVWQSSENPTKDRIEQDNETDLAFIYRLCKDEGLCLKIAN 182 Query: 184 GSLILFDEMVYEQKEAITTIVRGDD-----NVTGYSFALNTAYAAFRACTVTYTPPTSKE 238 S+++ +E YE++EA I R V SF NT + ++AC VT+T K+ Sbjct: 183 NSIVVLNEEDYEKQEAKYYIRRKSKETDVIKVIERSFT-NTLHDTYKACKVTHT--LKKK 239 Query: 239 PLKATYTPNGAPKNGPVLKINEQVDTXXXXXXXXXXXXXXXXXEGGKGTLSLMGDIRMVT 298 + AT+TP PK G VL + +QV + E TL + + + Sbjct: 240 TISATFTPKNPPKTGRVLNVKQQVSSQAEALRIAKKKLREKNREATTVTLKVYSLVPLYA 299 Query: 299 GLTINIKGWQRFDGKYIIESAKHSIGSSGYTTNLEIRKVL 338 G+T N+ + + +GKYI A I + TT L +R+ L Sbjct: 300 GMTFNLVEFGKLNGKYI---ASQVIQNDSSTT-LYLRRCL 335 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,890,904,657 Number of extensions: 72410263 Number of successful extensions: 139666 Number of sequences better than 1.0e-05: 192 Number of HSP's gapped: 139514 Number of HSP's successfully gapped: 192 Length of query: 340 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 204 Effective length of database: 1,779,438,163 Effective search space: 363005385252 Effective search space used: 363005385252 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)