BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0021.p
         (135 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4J3U8.1 A4J3U8_DESRM Phage baseplate assembly protein V               92   2e-17
C4BYJ3.1 C4BYJ3_9FUSO Phage baseplate assembly protein V               75   2e-12
B6WRR1.1 B6WRR1_9DELT Putative uncharacterized protein                 60   8e-08
A7AY78.1 A7AY78_RUMGN Putative uncharacterized protein                 54   3e-06

>A4J3U8.1 A4J3U8_DESRM Phage baseplate assembly protein V
          Length = 159

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 4/139 (2%)

Query: 1   MILIGRVSTSDAVAGSVRVTFADRDDMVSGELPVITPGGWGRGNA-IPLPGERVLCVFLD 59
           +I +G++S+ +    + RV F D+ D+VS +LPV+  G     +  IP PGE+V+C+FL 
Sbjct: 3   LIRVGQISSVNPEKCTARVMFQDKSDVVSYDLPVMVRGSLNNKDYWIPAPGEQVICLFLS 62

Query: 60  NGRSAGFCLGTYFAE-DDPPSGTKDQRGVWFEDGSYVYYDRTAKRLNIKGTGGMKI--EG 116
           +G + GF LG+ ++E D PP    ++R + F DG+ + YD     L +  TG + I   G
Sbjct: 63  SGVAQGFVLGSIYSEKDKPPVKDSNKRHISFSDGTKIEYDAATHTLTVNATGPVNIVAAG 122

Query: 117 DLTVTGIVSADVFNTKGGV 135
           ++ VTG V AD  + K  +
Sbjct: 123 NVNVTGDVIADGISLKKHI 141


>C4BYJ3.1 C4BYJ3_9FUSO Phage baseplate assembly protein V
          Length = 177

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 10/134 (7%)

Query: 1   MILIGRVSTSDAVAGSVRVTFADRDDMVSGELPVI-TPGGWGRGNAIPLPGERVLCVFLD 59
           +I +G V + +A  G+VRV F DRDD VS EL VI       +   IP   E VLCVFL 
Sbjct: 6   IIRVGNVDSINAQNGTVRVRFPDRDDKVSKELKVIYHKTHQDKSYFIPEINEIVLCVFLP 65

Query: 60  NGRSAGFCLGTYFAEDDPPSGTKDQRGVW-FEDGSYVYYDRTAKRLNIKGTGGMKIE--- 115
             +  GF LG ++ ++D    +   +  W F DG  + YDR A  L I     ++I+   
Sbjct: 66  GTQEEGFVLGAFYNQEDTVPVSDPNKAAWYFSDGGIIEYDRAAGNLLINAISKVEIKAPE 125

Query: 116 -----GDLTVTGIV 124
                G++T+ G V
Sbjct: 126 VEITAGNITLNGNV 139


>B6WRR1.1 B6WRR1_9DELT Putative uncharacterized protein
          Length = 205

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 13/137 (9%)

Query: 2   ILIGRVSTSDAVAGSVRVTFADR--DDMVSGELPVITPGGWG-RGNAIPLPGERVLCVFL 58
           I +G V+        V+V   D     + S  LPV+ P   G     +P  G++VLC+FL
Sbjct: 12  IRVGFVTARQPEKMRVQVELRDTVTQPLSSAWLPVLCPRASGDLAYDLPDVGDQVLCLFL 71

Query: 59  DNGRSAGFCLGTYFAEDDPPSGTKDQRGVWFEDGSYVYYDRTAKRLN--------IKGTG 110
             G   GF +G  + +  PP  + D+    F+DG+ + YDR A +L         +K TG
Sbjct: 72  PYGLEQGFVVGAMYGKASPPVSSGDKWHRRFQDGTVLEYDRAAHKLTAQVQGDVAVKATG 131

Query: 111 GMKIE--GDLTVTGIVS 125
            ++ E  GD++V+   S
Sbjct: 132 SVQAEATGDVSVSSAAS 148


>A7AY78.1 A7AY78_RUMGN Putative uncharacterized protein
          Length = 132

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 2  ILIGRVSTSDAVAGSVRVTFADRDDMVSGELPVITPGGWGRGNAIPLPGERVLCVFLDNG 61
          I IGRVS+ D  +G + VT+ D DD V+ +LPV + G   +   +P  G  VL + L NG
Sbjct: 6  IRIGRVSSIDYGSGMISVTYPDLDDSVTDDLPVFSMGDEYK---MPPVGAEVLVLHLSNG 62

Query: 62 RSAGFCLGTYFAEDDPPS 79
           +AG  +G Y+ E + PS
Sbjct: 63 CAAGVVMGRYWNEANKPS 80


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 917,064,540
Number of extensions: 41324067
Number of successful extensions: 77159
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 77179
Number of HSP's successfully gapped: 4
Length of query: 135
Length of database: 3,060,696,203
Length adjustment: 99
Effective length of query: 36
Effective length of database: 2,128,015,718
Effective search space: 76608565848
Effective search space used: 76608565848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)